Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g327 ATGCGGATGAGTTGTAATGGCTGTCGAGTCCTTCGCAAAGGCTGTAATGATAGCTGCACTCTCAGACCTTGCCTTCAGTGGATCAAAAACCCCGATTTTCAAGCCAATGCCACCGTCTTCCTCGCCAAATTTTACGGCCGCGCTGGCCTCATCAACCTTATCAATGCTGGCCCCGAACACCTCCGCCCTGCTATATTCAGATCATTGCTGTACGAGGCTTGTGGGAGGATCGTGAATCCGATATACGGCTCGGCCGGGCTTCTGTGGTCGGGAAGCTGGCAACTTTGTCAGTCGGCGGTGGAAGCAGTGCTCAGCGGCGCTCCGATCATGCAGATTTCGGCTGAGTCGGCCGTCAGCAGCATGAGCCCGCCGTTGAAAGCAGGAGATATTCGGCACGTGTCAAAGGATGAGAACTCTGCTGGCTCTTCTCACGAGCTTCACAAGGTTAAGAGCAGGGGGCGGTTCAAGCGCTCGAAAGCAGACAGCATGTCGGTGGAGACTGTGGAGGCTTCGCTAGTGAAGCCGACGCGTGATGGGAGCGACGTGGAGCTGGAGCTGACACTGGGCTTGGAGCCGATTCCAAAGGTGCAGAAGGCGTGTGCCGTGGTGAGAGAGAAGGAAGAGATGGCCGGCTCAGAAGACGACACCTGTAAAGTGGAACTGGCTCTTGAATACTCTGGTTAA 684 55.7 MRMSCNGCRVLRKGCNDSCTLRPCLQWIKNPDFQANATVFLAKFYGRAGLINLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSAGLLWSGSWQLCQSAVEAVLSGAPIMQISAESAVSSMSPPLKAGDIRHVSKDENSAGSSHELHKVKSRGRFKRSKADSMSVETVEASLVKPTRDGSDVELELTLGLEPIPKVQKACAVVREKEEMAGSEDDTCKVELALEYSG* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3660238 3661508 - Vvi17g327 Vvi17g327 779024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g327 227 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vvi17g327 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 166 - -
Vvi17g327 227 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Vvi17g327 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 166 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g309 Vvi17g327 ECH
Vvi14g884 Vvi17g327 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14189 PF03195 LOB 2.00E-23 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g327 - - vvi:100245622 434.491