Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g327 | ATGCGGATGAGTTGTAATGGCTGTCGAGTCCTTCGCAAAGGCTGTAATGATAGCTGCACTCTCAGACCTTGCCTTCAGTGGATCAAAAACCCCGATTTTCAAGCCAATGCCACCGTCTTCCTCGCCAAATTTTACGGCCGCGCTGGCCTCATCAACCTTATCAATGCTGGCCCCGAACACCTCCGCCCTGCTATATTCAGATCATTGCTGTACGAGGCTTGTGGGAGGATCGTGAATCCGATATACGGCTCGGCCGGGCTTCTGTGGTCGGGAAGCTGGCAACTTTGTCAGTCGGCGGTGGAAGCAGTGCTCAGCGGCGCTCCGATCATGCAGATTTCGGCTGAGTCGGCCGTCAGCAGCATGAGCCCGCCGTTGAAAGCAGGAGATATTCGGCACGTGTCAAAGGATGAGAACTCTGCTGGCTCTTCTCACGAGCTTCACAAGGTTAAGAGCAGGGGGCGGTTCAAGCGCTCGAAAGCAGACAGCATGTCGGTGGAGACTGTGGAGGCTTCGCTAGTGAAGCCGACGCGTGATGGGAGCGACGTGGAGCTGGAGCTGACACTGGGCTTGGAGCCGATTCCAAAGGTGCAGAAGGCGTGTGCCGTGGTGAGAGAGAAGGAAGAGATGGCCGGCTCAGAAGACGACACCTGTAAAGTGGAACTGGCTCTTGAATACTCTGGTTAA | 684 | 55.7 | MRMSCNGCRVLRKGCNDSCTLRPCLQWIKNPDFQANATVFLAKFYGRAGLINLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSAGLLWSGSWQLCQSAVEAVLSGAPIMQISAESAVSSMSPPLKAGDIRHVSKDENSAGSSHELHKVKSRGRFKRSKADSMSVETVEASLVKPTRDGSDVELELTLGLEPIPKVQKACAVVREKEEMAGSEDDTCKVELALEYSG* | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 3660238 | 3661508 | - | Vvi17g327 | Vvi17g327 | 779024 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g327 | 227 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Vvi17g327 | 227 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 166 | - | - | |
Vvi17g327 | 227 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 103 | IPR004883 | - | |
Vvi17g327 | 227 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 1 | 166 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14189 | PF03195 | LOB | 2.00E-23 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g327 | - | - | vvi:100245622 | 434.491 |