Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g33 ATGGATTCTCTAACATGGAAAACCATCCCAATGGTTTCTGTTGTGTTCCAGCTCTGCTTTCTCTTGAAGGCTCACCCCTCTTTGTCTCATCCTGACAAGATTATCCAGCTTCCTGGACAACCCCAGGTGGGCTTTCAGCAGTTTTCTGGTTATGTCAGTCTGGATGACAAGAAGCAAAGAGCTCTCTTTTACTACTTTGTTGAAGCTGAATCAGACCCAGCTTCAAAACCACTGGTTTTGTGGTTGAATGGAGGCCCTGGCTGTTCTTCACTTGGGGTGGGGGCATTCTCTGAAAATGGACCTTTCAGACCAAATGGGGAGTTTCTGTTGAGGAATGAGTATAGCTGGAACAGAGAAGCAAATATGCTGTATCTAGAGACACCAGTAGGAGTGGGATTCTCTTATTCATCTGATACCCCTTATGTCACAGTGGATGATAAGATAACAGCCAGGGACAATCTTGCGTTCTTGCAGCGCTGGTTCCTCAAGTTTCCCCAATACAAGCATAGGGATTTGTTTATCACAGGGGAAAGTTATGCAGGCCACTATGTTCCCCAACTTGCAGAACTCATGATTCGGTTCAACAAAAAGGAGAAGTTGTTCAATTTGAAGGGAATTGCTCTGGGTAATCCGGTTCTAGAATTCGCCACTGACCTCAATTCAAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCGGATTCAACATACAGATTGTTCACTTCTGCCTGTAACTATTCTCGCTATGTGAGTGAATACTATAGAGACTCAGTTTCATCTGTTTGTTCAAGGGTGATGGCCCAAGTAAGCAGAGAAACCAGTAAATTTGTGGACAAGTATGATGTTACCCTTGACGTCTGCCTTTCATCAGTACTCTCACAATCCAAAGTCATTAGTCCCCAACAAGTTGCAGAGACGATAGACGTGTGCATAGACGATAAAACTGTGAATTATCTAAACCGAAAAGATGTGCAGAAGGCTCTCCATGCCAGGCTTGTTGGCATTCGCAGTTGGACCGTCTGCAGCGACATTCTGGATTATGAGCTCCTCAACCTGGAGATACCTACGATTTCCATTGTGGGATCACTCATCAAGGCTGGAATTCCAGTCTTGGTCTATAGTGGAGATCAAGATTCAGTAATACCATTGACAGGGAGTCGAACTCTGGTTCATAATCTGGCTAAGGAGCTGGGACTAAACACAACTGTGCCTTACAGAGTTTGGTTTGAGGGGAAGCAGGTTGGTGGATGGACTAGAGTTTATGGTAATATCCTCTCATTTGCCACCATTAGAGGTGCTTCTCATGAAGCTCCCTTCTCGCAGCCTGAGAGATCACTAGTGTTGTTCAAGTCATTTCTTGAAGCCAGGCCTCTACCAGAATTTTTCTGA 1389 44.85 MDSLTWKTIPMVSVVFQLCFLLKAHPSLSHPDKIIQLPGQPQVGFQQFSGYVSLDDKKQRALFYYFVEAESDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLLRNEYSWNREANMLYLETPVGVGFSYSSDTPYVTVDDKITARDNLAFLQRWFLKFPQYKHRDLFITGESYAGHYVPQLAELMIRFNKKEKLFNLKGIALGNPVLEFATDLNSRAEYFWSHGLISDSTYRLFTSACNYSRYVSEYYRDSVSSVCSRVMAQVSRETSKFVDKYDVTLDVCLSSVLSQSKVISPQQVAETIDVCIDDKTVNYLNRKDVQKALHARLVGIRSWTVCSDILDYELLNLEIPTISIVGSLIKAGIPVLVYSGDQDSVIPLTGSRTLVHNLAKELGLNTTVPYRVWFEGKQVGGWTRVYGNILSFATIRGASHEAPFSQPERSLVLFKSFLEARPLPEFF* 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 260725 263753 - Vvi17g33 Vvi17g33 778730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g33 462 Pfam Serine carboxypeptidase 38 454 IPR001563 GO:0004185|GO:0006508
Vvi17g33 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Vvi17g33 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Vvi17g33 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Vvi17g33 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Vvi17g33 462 Gene3D - 310 346 - -
Vvi17g33 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 11 460 IPR001563 GO:0004185|GO:0006508
Vvi17g33 462 SUPERFAMILY alpha/beta-Hydrolases 36 458 IPR029058 -
Vvi17g33 462 PANTHER CARBOXYPEPTIDASE 11 460 - -
Vvi17g33 462 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Vvi17g33 462 Gene3D alpha/beta hydrolase 29 289 IPR029058 -
Vvi17g33 462 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Vvi17g33 462 Gene3D - 357 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g33 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - vvi:100247312 935.636
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g33 . . . . . . . . . . Cma10g00024 . Car10g00016 . . . . Bhi02g00627 . . . . . . Cla06g01779 Cam06g1972 Cec06g2023 Cco06g2030 Clacu06g1930 Cmu06g1870 Cre06g2683 . . Cone13ag0254 . . . . . . . . . . . . . . Cmo10g00021 . . . . . . Cpe18g00936 . . . . . . . . . . . . . . Lsi06g01676 Csa01g00015 Chy02g02698 Cme02g02105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000392 2 9 3 2 3 4 5 4 4 5 3 3 4 5 5 3 4 4 3 4 5 5 3 5 6 4 2 6 3 8 126