Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g332 ATGACTTCTATAGCTTCTCTTTTCAGGTGCTTATGGCTTTACTTCCTGGAGATGAATCGAAATCAGTCCAATTCCGATGTAGATACTAAAGCATCACAGATTCCACCTACTCGAAGTTTAATTGTTGGAAATATACATGTGCTCTTCAACCCAAATCGAGGAGACATCAAGCTAGGTCAGATGCGGCTGTTTCTCGAGAAGGCTCACAAACTATCACAAGAATGGGGCTGCATCCCTGTTGTACTTGCTGGAGACCTTAACAGCATGCCACAGAGTGCACTGTATCAGTTTCTGGCCTCATCTGAGTTGGACGTCCGGTTACATGATCGCAGAAAAATTTCTGGGCAGGTGGAACATCAGTCACAACATAGAGCCTACAGATATCAGAATGAAGATGCATCCAGATCAAGGCCATTGGTGCATAGATGGAGCAATGAAGAATTAAGACTTGCCACTGGCAGTGATGGAGTTACTCATCTTCAGCACTGTTTAAAGCTATGTAGTGCATACTATGGCATTCCTGGAAGCTGTAGAACAAGAGATAATTATGGAGAACCCTTAGCAACGTCATACCACTCCAAGTTTATGGGAACTGTTGATTATATATGGCATACTGAGGAACTTGTTCCTGTGAGAGTTCTTGAAACCTTACCTGTTGATATTTTAAGAAAAACAGGAGGGCTCCCAAGTGAGAAATGGGGCAGCGACCATCTTGCTCTCGTGTGTGAATTGGCCTTTGCAGATGATGGCAGTAGTTCTTGA 762 43.57 MTSIASLFRCLWLYFLEMNRNQSNSDVDTKASQIPPTRSLIVGNIHVLFNPNRGDIKLGQMRLFLEKAHKLSQEWGCIPVVLAGDLNSMPQSALYQFLASSELDVRLHDRRKISGQVEHQSQHRAYRYQNEDASRSRPLVHRWSNEELRLATGSDGVTHLQHCLKLCSAYYGIPGSCRTRDNYGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVDILRKTGGLPSEKWGSDHLALVCELAFADDGSSS* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3700339 3715271 + Vvi17g332 Vvi17g332 779029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g332 253 Gene3D Endonuclease/exonuclease/phosphatase 9 251 IPR036691 -
Vvi17g332 253 PANTHER PROTEIN ANGEL 35 246 - -
Vvi17g332 253 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 35 246 - -
Vvi17g332 253 Pfam Endonuclease/Exonuclease/phosphatase family 61 237 IPR005135 GO:0003824
Vvi17g332 253 SUPERFAMILY DNase I-like 36 247 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g332 - - - vvi:100252635 489.189
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g332 . . . Bda15g00518 . . . . . . Cma10g00237 . Car10g00224 . . . . . . . . . . . Cla06g01472 Cam06g1625 Cec06g1688 Cco06g1681 Clacu06g1590 Cmu06g1541 Cre06g2353 . . . Cone19ag0278 . . . . . . . . . . . Bma08g00064 . Cmo10g00252 . . . . . . . . . . . . . . . . . . . . . Lsi06g01335 . Chy02g02367 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006864 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 5 2 36