Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g338 ATGAAAGACACAGATTTCTTTTTCAGTGCTCTGTTGAAGCTGGTAGAAGGCTCCTCTCTCTCGAGTCCAAAATTCCAAGACGGGCTTCGCCTTCCTCACCTCCGATCTCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGATCGATGAGCTCAAGAACGAGGACATTCAGCTTCGATTGAACTCGATCCGGCGGCTCTCGACGATTGCTAGGGCGCTAGGAGAGGAGAGGACTAGGAAGGAGTTGATTCCATTTCTGAGCGAGAATAATGATGACGATGATGAGGTGCTTCTTGCGATGGCTGAAGAATTGGGGGTATTTATTCCCTATGTCGGAGGTGTTGAGCACGCGAATGTTCTGCTTCCTCCATTGGAGACCCTCTGCACTGTTGAGGAAACTTGTGTGAGGGACAAAGCGGTGGAGTCGTTATGCAGGATTGGAGCTCAAATGAGGGAGCCAGATTTGGTGGAATCCTTCATTCCTTTGGTGAAGAGATTGGCTGCTGGCGAGTGGTTTACTGCTCGAGTTTCCTCATGTGGATTATTTCATATTGCTTACCCCAGCGCTCCAGAGACATTAAAAACTGAATTACGAGCAATATATAGCCAGCTGTGTCAAGATGACATGCCAATGGTGAGGAGATCTGCTGCATCAAATCTGGGAAAGTTTGCTGCTACTGTTGAAGCTGCTCATTTGAAGGCTGACATCATGTCAATATTTGAGGATCTGACACAGGATGATCAAGATTCTGTTAGGTTATTGGCTGTTGAGGGTTGTGCAGCTCTCGGAAAGCTGTTGGAACCTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGGATAAGTCTTGGCGTGTTCGCTATATGGTTGCAAATCAATTATATGAGCTATGTGAAGCTGTTGGTCCTGAGCCTACCAGGTCAGACTTGGTTCCTGCATATGTTCGGTTGCTTCGTGACAATGAGGCTGAAGTACGCATAGCAGCTGCAGGAAAAGTAACAAAATTTTGCCGGATTTTGAACCCAGAACTTGCAATTCAGCATATTCTTCCTTGTGTGAAGGAATTATCATCAGATTCTTCCCAGCATGTTCGTTCTGCTTTGGCTTCAGTTATTATGGGAATGGCACCTGTTTTAGGAAAGGACGCAACAATAGATCAACTTCTGCCCATTTTCCTTTCTCTGCTTAAAGATGAGTTTCCTGATGTCCGACTGAATATTATCAGCAAGCTTGATCAAGTAAACCAGGTGATTGGAATTGATCTGCTGTCTCAATCCTTACTGCCGGCCATTGTTGAGCTTGCTGAGGATAGACACTGGAGGGTTCGGCTTGCAATAATAGAATACATTCCTTTACTAGCAAGTCAGCTGGGTGTTGGTTTTTTTGATGACAAGCTTGGTGCTCTTTGCATGCAATGGTTAAAAGATAAGGTTTATTCAATTCGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAGGAATTTGGCCCAGATTGGGCAATGCAGCACATAATTCCACAGGTTTTGGATATGATTAACAACCCACACTATCTGTATCGGATGACCATCCTCCATGCAATTTCTCTCCTTGCCCCTGTTATGGGCCCAGAAATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCCTATAGTGGACCAGTCTGTGGTAGACAAGACGATTCGTCCCTGTTTGGTTGAGCTGAGTGAGGACCCAGATGTTGATGTTAGGTTTTTTGCAAGCCAAGCACTACAGGCAAGTGATCAGATCATGATGTCTAGCTAG 1929 45.1 MKDTDFFFSALLKLVEGSSLSSPKFQDGLRLPHLRSQILLFPNCPFLFSHFHCSEMAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREPDLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVRRSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQVLDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVAKVLQSLTPIVDQSVVDKTIRPCLVELSEDPDVDVRFFASQALQASDQIMMSS* 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3777807 3798404 + Vvi17g338 Vvi17g338 779035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g338 642 Pfam HEAT repeat 297 325 IPR000357 GO:0005515
Vvi17g338 642 ProSiteProfiles HEAT repeat profile. 219 257 IPR021133 -
Vvi17g338 642 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 56 641 - -
Vvi17g338 642 ProSiteProfiles HEAT repeat profile. 609 642 IPR021133 -
Vvi17g338 642 ProSiteProfiles HEAT repeat profile. 297 335 IPR021133 -
Vvi17g338 642 ProSiteProfiles HEAT repeat profile. 531 569 IPR021133 -
Vvi17g338 642 ProSiteProfiles HEAT repeat profile. 258 296 IPR021133 -
Vvi17g338 642 Pfam HEAT repeats 416 514 - -
Vvi17g338 642 ProSiteProfiles HEAT repeat profile. 570 608 IPR021133 -
Vvi17g338 642 ProSiteProfiles HEAT repeat profile. 336 374 IPR021133 -
Vvi17g338 642 SUPERFAMILY ARM repeat 63 633 IPR016024 -
Vvi17g338 642 ProSiteProfiles HEAT repeat profile. 414 452 IPR021133 -
Vvi17g338 642 ProSiteProfiles HEAT repeat profile. 375 413 IPR021133 -
Vvi17g338 642 ProSiteProfiles HEAT repeat profile. 65 103 IPR021133 -
Vvi17g338 642 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 65 KDA REGULATORY SUBUNIT A BETA ISOFORM 56 641 - -
Vvi17g338 642 ProSiteProfiles HEAT repeat profile. 453 491 IPR021133 -
Vvi17g338 642 Gene3D - 57 634 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g338 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A - vvi:100266203 1148.27
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g284 Vvi17g338 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g338 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003579 2 5 2 2 2 1 2 1 1 0 1 1 1 1 1 2 1 4 2 1 1 2 1 1 0 1 1 2 2 2 46