Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g339 ATGGGGTTTCTGGGTGTCTCTCTTTTTGTGTTTCTTTTGTGGAATTTTGCATCTTCAAGCCCCCTTGTTGAATTGCGCCGCAAAAACGATGATCGCGAACCCACTTCTTTTATCTTGCCTTTGTATCCCAAATTGGGTTCTCGATCACTAGGGGATTTGGAGCTCAAATTGGGGAAGTTTGTGGACTTTCATGTAAATGATATGAAGCCCGGAGGGATCAACAAATTGGCTACTTCTGTCTCTGCTTTCGATTCATCTACCATTTTCCCTGTTAGGGGCGACGTTTATCCAAATGGCTTATATTTCACACACATTTTTGTTGGGAGTCCTCCAAGACGTTATTTTCTTGACATGGATACCGGCAGTGACTTAACATGGATTCAGTGTGATGCTCCATGCACTAGCTGTGCCAAGGGACCAAATCCTTTGTACAAGCCCAAAAAAGGCAACTTAGTACCGTTGAAGGACTCATTGTGTGTAGAAGTTCAGAGAAACCTAAAGACAGGATATTGTGAGACTTGTGAACAGTGTGACTATGAGATAGAATATGCAGATCATAGCTCCTCAATGGGTGTTCTTGCAAGTGATGATCTTCATCTAATGCTTGCAAATGGATCACTGACCAAGTTAGGCATTATGTTCGGGTGTGCATATGATCAACAAGGCTTACTTTTAAACTCTCTGGCAAAGACTGATGGAATCCTTGGACTTAGCAAAGCTAAAGTTAGCTTACCTTCTCAATTGGCAAGCCAAAGGATCATTAACAATGTGCTCGGTCACTGCCTTACCAGTGATGCAACTGGTGGTGGATATATGTTCTTAGGTGATGACTTTGTACCCTACTGGGGTATGGCATGGGTACCCATGCTTAACAGCCATTCCCCAAATTATCACTCACAGATTATGAAAATAAGTCATGGAAGCAGGCAGCTTAGCTTAGGCAGGCAGGATGGTAGAACAGAACGGGTAGTTTTTGATACCGGCAGTTCTTACACATACTTTCCAAAAGAAGCATATTATGCTTTAGTTGCTTCTCTTAAAGATGTTTCTGATGAAGGGCTCATCCAAGATGGGTCAGATCCTACATTGCCTGTTTGTTGGCGAGCTAAATTTCCAATAAGATCTGTGATAGATGTGAAGCAGTTCTTCCAGCCTCTAACCCTTCAGTTTAGGAGCAAATGGTGGATTGTCTCCACAAAATTCCGGATTCCTCCAGAAGGCTACTTGATAATAAGTAATAAAGGCAATGTGTGCTTGGGTATCCTTGATGGAAGCAATGTGCATGATGGATCCACAATTATACTTGGAGACATCTCATTGCGGGGAAAATTGGTGGTGTACGACAATGTGAACCAGAAAATTGGGTGGGCACAGTCCACTTGTGTGAAGCCACAAAAAATTAAAAGCCTTCCATTCTTCTGA 1422 42.55 MGFLGVSLFVFLLWNFASSSPLVELRRKNDDREPTSFILPLYPKLGSRSLGDLELKLGKFVDFHVNDMKPGGINKLATSVSAFDSSTIFPVRGDVYPNGLYFTHIFVGSPPRRYFLDMDTGSDLTWIQCDAPCTSCAKGPNPLYKPKKGNLVPLKDSLCVEVQRNLKTGYCETCEQCDYEIEYADHSSSMGVLASDDLHLMLANGSLTKLGIMFGCAYDQQGLLLNSLAKTDGILGLSKAKVSLPSQLASQRIINNVLGHCLTSDATGGGYMFLGDDFVPYWGMAWVPMLNSHSPNYHSQIMKISHGSRQLSLGRQDGRTERVVFDTGSSYTYFPKEAYYALVASLKDVSDEGLIQDGSDPTLPVCWRAKFPIRSVIDVKQFFQPLTLQFRSKWWIVSTKFRIPPEGYLIISNKGNVCLGILDGSNVHDGSTIILGDISLRGKLVVYDNVNQKIGWAQSTCVKPQKIKSLPFF* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3799064 3805978 - Vvi17g339 Vvi17g339 779036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g339 473 Pfam Xylanase inhibitor C-terminal 297 457 IPR032799 -
Vvi17g339 473 SUPERFAMILY Acid proteases 95 463 IPR021109 -
Vvi17g339 473 Gene3D Acid Proteases 282 467 IPR021109 -
Vvi17g339 473 PANTHER ASPARTYL PROTEASE APCB1 3 465 - -
Vvi17g339 473 Gene3D Acid Proteases 77 276 IPR021109 -
Vvi17g339 473 PRINTS Pepsin (A1) aspartic protease family signature 323 334 IPR001461 GO:0004190|GO:0006508
Vvi17g339 473 PRINTS Pepsin (A1) aspartic protease family signature 107 127 IPR001461 GO:0004190|GO:0006508
Vvi17g339 473 PRINTS Pepsin (A1) aspartic protease family signature 433 448 IPR001461 GO:0004190|GO:0006508
Vvi17g339 473 PANTHER ASPARTYL PROTEASES 3 465 IPR001461 GO:0004190|GO:0006508
Vvi17g339 473 Pfam Xylanase inhibitor N-terminal 101 276 IPR032861 -
Vvi17g339 473 ProSiteProfiles Peptidase family A1 domain profile. 101 457 IPR033121 -
Vvi17g339 473 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 323 334 IPR001969 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g339 - - - vvi:100261096 967.992
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g339 . . . . . Bpe13g00343 Bma06g00033 . Cmo13g01071 . . . . . . Cpe20g00114 . . . . . . . . . . . . . . . Cone2ag0698 . . . Lsi02g00172 Csa01g00655 Chy12g01445 Cme12g01885 . . . . . . . . Sed01g1713 . . Cma13g01031 . Car13g00865 . . . Bhi08g01222 Tan05g2279 Cmetu12g0397 Lac10g0224 Hepe07g2405 . . Cla04g01102 Cam04g1155 Cec01g1665 Cco01g1711 Clacu04g1182 Cmu04g1162 Cre01g1460 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012585 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28