Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g341 ATGAGGAAGGAGGAGCTGGGGGTGTTGGTGCAGTCACTGAAACAAATGGCAGCGGCTCGGGAAGTGGTGAATATTAGTAAAAAGGTAGGTGAACTAATTGAAGACATGACGCATAGAATGCTATTTGGGCGCTGTAAGGATTATCAGAGGGCTGACTTGAAGGCGCTTGTGCAAGAAACATTGATCTTGGTAGGAGCTTTCAATATAGCAGATTATGTGCCTTTTCTGGGGGCCCTCGATCTTCAGGGTTTGAAAAGGCGTATGAAGGCAATTAGTGGAGCTGTTGACCATATTTTAGAAAAGGTCATTGATGAGCATAAACAAGATGCTAGCGAAAATCAAGGAAACCATAAAGATTTTGTTGATGTGATGCTATCACTGATGAACGAGATGAAAAACTTTCATCAAGAGCCATCATATTTAATTGAACAAGAAAATATTAAAGGAATTGTATGGGACATAATTATTGGTGCAATTGACACTTCAGCTACCACCATTGAATGGTTACTTTCTGAATTGTTTAGACATCCAAGAGTTATGAGGCAACTTCAAGAAGAATTAGAGAATGTGATTGGAATGGAACGAATGGTAGAAGAGGTTGATTTGGCAAATCTAGTTTATTTAGACATGGTATTGAAAGAGGGTTTAAGACTACATCCTGCTGGACCATTGCTTCTCCCACATGAGTCCATCGAGGATATTACTCTAAATGGATATTACATACCTAAGAAGTCACGAATTATCATCAATGCATGGGCAATTGGAAGAGATCCTAATATATGGTCCAATAATGTTGAAGACTTTTTTCCTGAGAGGTTCATTGGTAGCAATATAGATTTTCAAGGGAAGGATTTTCAGTTCATTCCATTTGGATCAGGTCGTCGAAAATGTCCTGGAATGCAATTAGGTCTAATAAACGTTCGGCTTGTGTTAGCTCAATTAGTACATTGTTTTGATTGGAAACTACCTAATGGCATGTTACCTAGTGAGTTGGATATGAGCGAGGAATTTGGTTTGGCATTGCCAAGGGCCACTCACTTACATGCTCTTCCTACTTATCGACTTCTTCCCAAATGGACCGTGTGCACAGTTGGTTGTGTGAGGCTTCGAAAATGCAAGCACTTCTTACTGAAACACTTGGGGGACTGTGACGATGGTCATATTGATGTTTTGTCTTTGGCCAGTTTGCCAGAGAGGAAACAGAGACATGATAAAGACCCTAGCAGGCATCTATTGATTTTCAAACCAAGAACAAACCAGAAGGATGTGCACAGTCTAAGCACTCTCGAGAGAGGTGGGTACCAAAAAAACAGAGAGTGA 1320 40.45 MRKEELGVLVQSLKQMAAAREVVNISKKVGELIEDMTHRMLFGRCKDYQRADLKALVQETLILVGAFNIADYVPFLGALDLQGLKRRMKAISGAVDHILEKVIDEHKQDASENQGNHKDFVDVMLSLMNEMKNFHQEPSYLIEQENIKGIVWDIIIGAIDTSATTIEWLLSELFRHPRVMRQLQEELENVIGMERMVEEVDLANLVYLDMVLKEGLRLHPAGPLLLPHESIEDITLNGYYIPKKSRIIINAWAIGRDPNIWSNNVEDFFPERFIGSNIDFQGKDFQFIPFGSGRRKCPGMQLGLINVRLVLAQLVHCFDWKLPNGMLPSELDMSEEFGLALPRATHLHALPTYRLLPKWTVCTVGCVRLRKCKHFLLKHLGDCDDGHIDVLSLASLPERKQRHDKDPSRHLLIFKPRTNQKDVHSLSTLERGGYQKNRE* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3823247 3831307 - Vvi17g341 Vvi17g341 779038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g341 439 PANTHER - 13 355 - -
Vvi17g341 439 SUPERFAMILY Cytochrome P450 3 354 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g341 439 PRINTS E-class P450 group I signature 146 163 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g341 439 PRINTS E-class P450 group I signature 166 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g341 439 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g341 439 PRINTS E-class P450 group I signature 287 297 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g341 439 PRINTS E-class P450 group I signature 297 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g341 439 Gene3D Cytochrome P450 1 352 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g341 439 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 290 299 IPR017972 GO:0005506|GO:0016705
Vvi17g341 439 PANTHER CYTOCHROME P450 71B11-RELATED 13 355 - -
Vvi17g341 439 Pfam Cytochrome P450 3 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g341 439 PRINTS P450 superfamily signature 157 174 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g341 439 PRINTS P450 superfamily signature 210 221 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g341 439 PRINTS P450 superfamily signature 288 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g341 439 PRINTS P450 superfamily signature 297 308 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g341 - - - vvi:100259359 718.768
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00284 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000178 4 7 3 4 2 4 0 6 3 8 4 3 4 9 9 8 4 6 2 6 11 7 2 9 10 11 15 7 7 6 181