Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g342 ATGATGATTACTTTCAATGTCTTCTTTAATGTGGTCCATATTTGTACGTTACTTTCCTATTGCTGGAGAGGTGGTGGATATCAGCGCAATGGTAGCTGGGGTTGTCGAAGATATGGCGTATCGAATGTTTTTGGACGTAACAAGGTCCAGATTATTGACTTGAAAACACTAATTCGAGAGTTCACTAGGTTGGCAGGAACTTTTAATCTTGCAGACTATGTGCCATTCCTAGGCCCTCTTGACCTTCAGGGACCGACTCAACTCCTTCGCACAAATAGTGAGGCTATAGATGAATTCTTGGAGAAGATAATTGATAAGCATATACAAGATGTTAGCAAAGATGAAGTAAATCATATGAATTTCATTGATGTTGTGCTATCACTAATGAATAAGTCAAACAATTATGAGGATGAGTCGTTATATGCGATTGATCGAAAAAATGTCAAAGCAATCATCTTGGATGCACTTGCGGGTGGAACTGACACTTCAATTACTTCAATTGAGTGGATTCTCTCTGAACTACTAAGGCATCCAAGAGTGATGAGACAACTTCAAGAAGAGTTAAAGAATGTAGTTGGCATGCGTCGAATGGTGGAAGAGTCTGACTTGGAAAATTTGGACTACTTGAATATGGTGGTGAAAGAAACCTTAAGGCTGCATCCTACTACACCACTTCTAATTCCACATGAGTCTATGGAAGATATTGTAATTAATGGATATTACATACCTAAGAAGTTAAGAATTCTGATAAATGCGTGGACAATTAGAAGAGATCCTAATGTTTGGTCTAACAATCATGAAATAATTGAAAATACTTATCATATAATTCAAAATACTTCAATAATTATCAAATTTTTGTACATAGTTTATAAAAATTTCATAAAACTACACATTTATATGAAAAAAATTCCTAACATGTGGCTAATAAGAGGTCTGGGTCCATTTGGCAGTATTTTCTCCCTTGTCTACCACCATAGCACCTTAATTTCTTACCCGTCATCTCCGGTCTCTGCTAGCAAGTCTGCCCAGTTTATATGTATCCAATGTAACATACAAGTACAACCAGGAAACGTGGTGGATATTAGTACAAGGGTTGCCGAGGTCATCGAAGATATGGCGTACCGGATGGTTTTTGGACACGACAAGGATGAGATGATTGACCTGAAAACCCTAATTGGAGAGGCCACCAGCTTGGCTGGAACTTTCAATATTGCAGATTACTTGCCCTTCTTAGGGTCATTTGACCTTCAGGGATTGACTCGACGCTTCCAGGCAGCCAGTGAAGCTATAGATGAAGTCTTGGAGAAAATAATTGACAAGCATACAAAAGATGCTAGGGATGGAGTGAATCATATGAATTTCATGGACATCATGCTATCACTGATGAGTAAGTCCAATGATTTTAAGGATGAGCCTTTGTACGCCATTGATCGAACAAATGTCAAAGCAATCATATTGGACATCCTTGTCGGTGGAATCGACTCTTCGCTTATTTCCGTCGACTGGGCTCTCGCAGAACTACTACGACATCCAAGGCGTGTATGTGTTGAGGCAAAGTTTTTTACGTTTGTGTATTTTGGTTGTTCGGTGGGAAAACTCAAGCCTTTATTTTTCATTCTTGGAGCCTTATGGATCACCTTATCACAGCTAAAACAACTACGAGCAAGCCACCAGAAACTGCCACCCGGTCCCTGGGGGTTACCAGTTATTGGTTGCCTCCATATGCTGGGAAACCTTCCTCACCGCAACCTCACCCGGTTAGCCAAGAAGTATGGTCCCATCATGTATATGCGACTGGGGTGTGTTCCAACTGTCATAGTCTCATCGGCCCAAGCCACCAAGCTATTCCTCAAAACCCATGATGTTGTGTTTGCCAGCCGGCCTAAGCTCCAAGCCTTCGAGCACCTGACCTACGGGACTAAGGGCATTGCCTTTAGCGAGTATGGTCCTTACTGGCGCAATGTTAGAAAATTGTGGATGTTGGTGCAGTCACTTAAAGAAATGGCAGCAGCTGGAGAGGTGGTGGATATCAGTACAAAGGTTGCTCAGGTTGTCGAAGATATTTCGTACCGGATGGTTTTTGGGCGCAACAAGGATGGGATGATTGACTTGAAAACCCTTGTCCGAGAGGGCACCAGGTTGGCAGGGACTTTTAATCTTGGAGATTATTTTCCCTTCCTTGGGCCTCTTGACCTTCAGGGGTTAGTTCAACGTTTCAAGGCAATTAACAAGGCTGCAGATGAAGTCTTAGAGAAAATAATTGATAGACGTATACAAGATGGTGGCAAAGATCATAACCATTCCAATTTCATTGACATCATGTTATCCTTGATGAGTAACTTCAGTAATCTTCGTAGTGAGTCTTCGTACATCATTGATCGGACAAATGTGAAAGCAATTTTATTGGACATGCTTGTGGGTGGTATCGACTCTTCAAGCACTACGATTGAATGGGTTTTCTCAGAACTCCTACGACATCCTAGAGTAATGAGACAACTTCAACATGAACTACAAAATGTAGTTAAAATGGATCGCATGGTAGATGAAAGTGATTTGGAAAATTTAGTATACTTGAATATGGTGGTCAAAGAGGTCCTGAGACTACACCCAATTGGACCATTTTTAGTCCCACATGCGTCCACGGAGGACATTACAATTGAAGGACATTTCATACCCAAAAGGTCAACAATTCTTATAAATACATGGGCTATTGGAAGAGATCCTAATTTTTGGTCTGACAATGTTGATGAATTTTTACCGGAGAGGTTTATTAACAGCAATATAGACCTCCAAGGACGTGACTTTGAGCTTATTCCATTTGGATCTGGTCGTCGAGGATGTCCTGGGATACAACTAGGTCTGAGAACTGTTCGACTTGTGTTAGCTCAATTGCTGCATTGTTTCAACTGGGAGTTACCAAACGATATGTCATCAGATGACTTGGATATGAGCGAAAAATTTGGTTTAACAATGCCAAGGAATGGTGTCTCTCTGAATGTGAATAATAATTTTCTCTATGTTTATCTCTGCATGTTTTTTGAATTGTGTAATAGCTTTTCTCACACTAGATCAGTTGATGGATTAGGGTTAATTCCATTTTTTTTCCAACAAATGATGTCATTTTGCTCTTGCCTAAGGTTTGAAAGTTGA 3150 40.51 MMITFNVFFNVVHICTLLSYCWRGGGYQRNGSWGCRRYGVSNVFGRNKVQIIDLKTLIREFTRLAGTFNLADYVPFLGPLDLQGPTQLLRTNSEAIDEFLEKIIDKHIQDVSKDEVNHMNFIDVVLSLMNKSNNYEDESLYAIDRKNVKAIILDALAGGTDTSITSIEWILSELLRHPRVMRQLQEELKNVVGMRRMVEESDLENLDYLNMVVKETLRLHPTTPLLIPHESMEDIVINGYYIPKKLRILINAWTIRRDPNVWSNNHEIIENTYHIIQNTSIIIKFLYIVYKNFIKLHIYMKKIPNMWLIRGLGPFGSIFSLVYHHSTLISYPSSPVSASKSAQFICIQCNIQVQPGNVVDISTRVAEVIEDMAYRMVFGHDKDEMIDLKTLIGEATSLAGTFNIADYLPFLGSFDLQGLTRRFQAASEAIDEVLEKIIDKHTKDARDGVNHMNFMDIMLSLMSKSNDFKDEPLYAIDRTNVKAIILDILVGGIDSSLISVDWALAELLRHPRRVCVEAKFFTFVYFGCSVGKLKPLFFILGALWITLSQLKQLRASHQKLPPGPWGLPVIGCLHMLGNLPHRNLTRLAKKYGPIMYMRLGCVPTVIVSSAQATKLFLKTHDVVFASRPKLQAFEHLTYGTKGIAFSEYGPYWRNVRKLWMLVQSLKEMAAAGEVVDISTKVAQVVEDISYRMVFGRNKDGMIDLKTLVREGTRLAGTFNLGDYFPFLGPLDLQGLVQRFKAINKAADEVLEKIIDRRIQDGGKDHNHSNFIDIMLSLMSNFSNLRSESSYIIDRTNVKAILLDMLVGGIDSSSTTIEWVFSELLRHPRVMRQLQHELQNVVKMDRMVDESDLENLVYLNMVVKEVLRLHPIGPFLVPHASTEDITIEGHFIPKRSTILINTWAIGRDPNFWSDNVDEFLPERFINSNIDLQGRDFELIPFGSGRRGCPGIQLGLRTVRLVLAQLLHCFNWELPNDMSSDDLDMSEKFGLTMPRNGVSLNVNNNFLYVYLCMFFELCNSFSHTRSVDGLGLIPFFFQQMMSFCSCLRFES* 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3846663 3879071 - Vvi17g342 Vvi17g342 779039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g342 1049 Pfam Cytochrome P450 52 264 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 Pfam Cytochrome P450 561 659 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 Pfam Cytochrome P450 660 997 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 Pfam Cytochrome P450 358 512 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 Gene3D Cytochrome P450 334 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 Gene3D Cytochrome P450 545 1004 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 Gene3D Cytochrome P450 37 268 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 PRINTS P450 superfamily signature 807 824 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 PRINTS P450 superfamily signature 860 871 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 PRINTS P450 superfamily signature 938 947 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 PRINTS E-class P450 group I signature 588 607 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 PRINTS E-class P450 group I signature 612 633 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 PRINTS E-class P450 group I signature 796 813 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 PRINTS E-class P450 group I signature 816 842 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 PRINTS E-class P450 group I signature 859 877 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 PRINTS E-class P450 group I signature 937 947 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 PRINTS E-class P450 group I signature 947 970 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 SUPERFAMILY Cytochrome P450 561 997 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 940 949 IPR017972 GO:0005506|GO:0016705
Vvi17g342 1049 PANTHER CYTOCHROME P450 71B11-RELATED 530 1037 - -
Vvi17g342 1049 PANTHER CYTOCHROME P450 71B11-RELATED 358 512 - -
Vvi17g342 1049 PANTHER CYTOCHROME P450 71B11-RELATED 25 267 - -
Vvi17g342 1049 SUPERFAMILY Cytochrome P450 354 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 SUPERFAMILY Cytochrome P450 51 266 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi17g342 1049 Coils Coil 416 436 - -
Vvi17g342 1049 PANTHER - 530 1037 - -
Vvi17g342 1049 PANTHER - 25 267 - -
Vvi17g342 1049 PANTHER - 358 512 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g342 - - - vvi:100243878 901.738
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000178 4 7 3 4 2 4 0 6 3 8 4 3 4 9 9 8 4 6 2 6 11 7 2 9 10 11 15 7 7 6 181