Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g344 | ATGGCTGGGATCTTCGAGTACTTCGTGGTGTGTGGGCTTGGTCCGGAGGTCCGAACCCTAGACGGCAACAAGGGCTTCCATGGAATGGGCGTTATGTACTTGTCCTCTCTTCTTGATCAGTACCCTCCTTCCAATCACTCCCTCTACCCTCCTCCGCCGCCTCAGCTTCCCACTTGTGTTCTGCCAGCTGGTGTGGAGTTCTATTCATCAGGGTTTGATTCTAATGATGTCTCAACTTTTCCTCGGAGCTATCCCATTGTTTTAACTGAGGGTGATGGTTCTAAAATTTATGTTAGCTGCATTGCTTTTCGAGATCCAGTCAGTGATGATATTGCAGAGGCTTATCGTATTCCCCCAAATTCCTTTGCTGACAAGTGTATTTGTCTTGTTTCGCGCTTGCCTAGTTTCTGTATGCTTCGAAATGCACTGGAGGAACTATTTGCACTTTGCTTTTCTCCTACAGGAAGCAGCAAGCCCCTGTGGGACGTTATAGAATATATGGTGTCTAATGTTCCTCTGCCTACTCCTGGAAAGGATAGAGTCCTATTTGCTATTGAGAACTGCCTGCTTTCTGTGGAGGCTCCTCCAAAAGAGGGGCTCCCCCATGCTGATATATCATTCCAGCCACTGGTAGAATGCTTGGATGTTGACAACTTAATTACATTTTTTACAGCTGTATTACTTGAAAGGAGGATATTGCTGCGATCAGACAAGTACTCACTTTTAACTCTTGTATCCGAGGCCATATGTCATTTAATTTATCCATTCCGGTGGCAGCATGTATACATTCCATTACTATTTTTCAGTGGAGTGGACTATATTGATGCTCCTACACCATATATGATGGGTCTCCATTCAGGTGTTGACACTTCTAATCTGGCAATGGATGGTGATATGATCTCTATTATGGAGCATAAACATGATGCAGTCAATCCATATGGAACATTGAGTCTCACTCCTTGTATAACTGGGATTGTCTTGTTCTTCTTAATCTATGGAATATCAAATGTTGTTGTTGTTGACCTTGCATACAACCGGATTACGACAACAGAGGAAATACCTCCTATACCGGAGCCAGATCTATCGTCTTTGCGTGGTGATCTACTAAAGTTATTGCATCCCAATGTGGTGGGGATAGATGCGATGAAAGCTAGTTTTGGTAATTCATCAGAGCAATATCCTAAAGTTGGCAACAAACCTTGGGGAGAAGATCATGATCTTCAACTTAGACTAATATTCCTGAAGTTCTTTGCATCAATTTTGGGTGGCTACCGCAATTTTATTGAAAATACGGGAACACATGTCTTCAACACTCAAGCATTCTTGAAGAAGCGCGCTCGATCAACCAATCAACCACCAGAGCCCATGATAACTCAGTTCTTGGACTCTCATGGCTTCTTGGATTATGCGGAGAGGGGTTTAGGTTCTGATGAAAACAATAGCAATCTTCTTGACAAATTACAAGATGCAATTGGAAGGGGTCAAAACCCTATGTCAATTCTTCCATCATCTTTGGTAGAGCCTGAGATTATAACAATATCGGATCCTGGTGTTGGAATATCAGGATCTGGTGCGAAATATACTTATGATAGGTTTCCTTCAAACAATAGAACAGAAGAGCAAAAAGAAAAGAGGAAGCAGATTCTTGCAGCAGCAAGTGGAGCTTTTGATTATTCAGGAAGTAGACATACTCCTAGTTCACCTTCTGTGCTTGTGGGTAAAGATAAGGCAGAAAGTCTGAGTCCAAGAGAAAGGGCTGCAGAACGGGAACGCATGGTTCTGGACATCAAAGTCAAACTGCAGGGATTATGGTTGCGTCTTTTGAAATTGGGAGCAACTGATGATCCTCTCTCATCATTTGAATATGGTACAATCCTTGCTTTGATTGAGTCTGATGCGGAAGGAATTGGCGGTAGTGGATTTGTTGAGTGTATAAGGGAGCACATACATTCAGGATGGCAATGTCATTTGACTGAGGAGCAGTTTATTGCAGTCAAAGAATTGCTCAAAACTGCAATTGGTCGTGCAACCTCTCGGAATGACATGCCCACCATCAGAGATGCACTTGAGGTGTCTGCTGAAATGTATAAGAAAGACGCTAATAATGTTCCAGACTATGTCCAACGCCATCTTATTTCTCTATCTATCTGGGAAGAGTTACGGTTTTGGGAAGGATACTTTGACTATCTAATGGATCGATCTTCAAACAAGTCAACCAATTACGCAACTCAGGTGACAACACAGCTAATTTTAGTGGCATCACACATGGCGGGGTTGGGACTTCATGATAATGATGCTTGGTACATGATTGAAACAATTGCGGAGAAAAACAACATTGGAAACAAGCAGTTTATAAAACTCAGAGGTTTCTTGTCACATGTCCAACAACTACGCATCAGTTACTGGGGAATCTCTTCCGTGAAGGCCCAATCCATGTCCTCATTTGGATTGCCATCCCCTCATTCACATGATTCCACAGATGATGACCAACAACCTGCTGAGGCTTCTGGCGTTGGAAGGAGCTGGGTCCAGAGCATGTTTAGCAGAGATACAACATCAAGAACAAATTCTTTCAGTCGTGTTCGTAGGTGGACTTCTGATAGTGGCACTTTAGCTGCAAATGAGAATGGAACTCCTCGCAAACAAGATCTATCCTCTTTTGGTCAAAAGAAAATTCAGACCAGTGTTCGCATGCTTAGAGGTCATAGTGGTGCTGTTACTGCATTACATTGTGTAACAAGAAGAGAGGTGTGGGATCTTGTGGGTGATCGTGAAGATGCAGGTTTCTTTATCAGTGGAAGCACAGACTGCTTGGTGAAGATCTGGGATCCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAAGACTGTCCGTGCAATAAGTTCTGATCGTGGGAAAGTGGTATCAGGATCTGATGATCAGTCTGTTATTGTATGGGATAAACAAACATCTCAACTTCTAGAAGAGCTAAAAGGCCATGATGGACAGGTCAGCTGTGTGCGTATGCTGTCAGGAGAACGTGTCCTTACTGCTGCCCATGATGGAACTGTGAAGATGTGGGATGTGAGAACTGATACGTGTGTGGCAACTGTTGGTCGTTGCTCGAGTGCAGTTCTTTGCATGGAGTATGATGACTCAACAGGAATCTTGGCTGCTGGTGGTAGAGATGCGGTTGCAAACATTTGGGACATTCGTGCCGGTCGGCAGATGCACAAGCTTTTAGGGCATACAAAATGGATCCGGTCAATAAGAATGGTCGGAGATACTGTTATTACTGGTAGTGATGATTGGACAGCAAGAATGTGGTCTGTTTCACGAGGTACATGTGATGCTGTTCTAGCTTGCCATGCTGGTCCAATTTTATGTGTTGAGTATTTGATGTCAGACAGAGGAATAATAACAGGTTCAACTGATGGGCTGCTTCGATTTTGGGAAAATGAAGAGGGAGGTTTAAGATGCGTGAAGAATGTTACTATTCATAATGCTCCTATCTTATCTGTCAATGCTGGGGAACACTGGTTAGGAATTGGAGCAGCTGATAATTCTATGTCTCTCTTTCATCGGCCTCAAGAAAGACTAGGTGGCTTCTCTAGCACAGGATCAAAGATGGCTGGGTGGCAACTATACAGAACACCGCAAAGAACAGTTGCCCTGGTAAGATGCGTGGCTTCAGATCTTGAAAGAAAAAGGATATGCAGTGGTGGTCGTAATGGACTTCTTAGGCTATGGGAAGCGACCATCAACATCTAA | 3765 | 43.48 | MAGIFEYFVVCGLGPEVRTLDGNKGFHGMGVMYLSSLLDQYPPSNHSLYPPPPPQLPTCVLPAGVEFYSSGFDSNDVSTFPRSYPIVLTEGDGSKIYVSCIAFRDPVSDDIAEAYRIPPNSFADKCICLVSRLPSFCMLRNALEELFALCFSPTGSSKPLWDVIEYMVSNVPLPTPGKDRVLFAIENCLLSVEAPPKEGLPHADISFQPLVECLDVDNLITFFTAVLLERRILLRSDKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSNLAMDGDMISIMEHKHDAVNPYGTLSLTPCITGIVLFFLIYGISNVVVVDLAYNRITTTEEIPPIPEPDLSSLRGDLLKLLHPNVVGIDAMKASFGNSSEQYPKVGNKPWGEDHDLQLRLIFLKFFASILGGYRNFIENTGTHVFNTQAFLKKRARSTNQPPEPMITQFLDSHGFLDYAERGLGSDENNSNLLDKLQDAIGRGQNPMSILPSSLVEPEIITISDPGVGISGSGAKYTYDRFPSNNRTEEQKEKRKQILAAASGAFDYSGSRHTPSSPSVLVGKDKAESLSPRERAAERERMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWQCHLTEEQFIAVKELLKTAIGRATSRNDMPTIRDALEVSAEMYKKDANNVPDYVQRHLISLSIWEELRFWEGYFDYLMDRSSNKSTNYATQVTTQLILVASHMAGLGLHDNDAWYMIETIAEKNNIGNKQFIKLRGFLSHVQQLRISYWGISSVKAQSMSSFGLPSPHSHDSTDDDQQPAEASGVGRSWVQSMFSRDTTSRTNSFSRVRRWTSDSGTLAANENGTPRKQDLSSFGQKKIQTSVRMLRGHSGAVTALHCVTRREVWDLVGDREDAGFFISGSTDCLVKIWDPTLRGSELRATLKGHTKTVRAISSDRGKVVSGSDDQSVIVWDKQTSQLLEELKGHDGQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTVITGSDDWTARMWSVSRGTCDAVLACHAGPILCVEYLMSDRGIITGSTDGLLRFWENEEGGLRCVKNVTIHNAPILSVNAGEHWLGIGAADNSMSLFHRPQERLGGFSSTGSKMAGWQLYRTPQRTVALVRCVASDLERKRICSGGRNGLLRLWEATINI* | 1255 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 3898801 | 3949355 | - | Vvi17g344 | Vvi17g344 | 779041 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g344 | 1254 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 1055 | 1069 | IPR019775 | - | |
| Vvi17g344 | 1254 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 1078 | 1117 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 955 | 985 | - | - | |
| Vvi17g344 | 1254 | SUPERFAMILY | WD40 repeat-like | 896 | 1249 | IPR036322 | GO:0005515 | |
| Vvi17g344 | 1254 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 1040 | 1077 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 1118 | 1150 | - | - | |
| Vvi17g344 | 1254 | Pfam | WD domain, G-beta repeat | 990 | 1026 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | Pfam | WD domain, G-beta repeat | 953 | 985 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | Pfam | WD domain, G-beta repeat | 1073 | 1108 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | Pfam | WD domain, G-beta repeat | 896 | 943 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | Gene3D | - | 847 | 1039 | IPR015943 | GO:0005515 | |
| Vvi17g344 | 1254 | ProSiteProfiles | Tripartite DENN domain profile. | 19 | 481 | IPR037516 | - | |
| Vvi17g344 | 1254 | CDD | WD40 | 895 | 1191 | - | - | |
| Vvi17g344 | 1254 | SMART | WD40_4 | 892 | 943 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | SMART | WD40_4 | 1111 | 1150 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | SMART | WD40_4 | 988 | 1026 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | SMART | WD40_4 | 948 | 985 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | SMART | WD40_4 | 1155 | 1192 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | SMART | WD40_4 | 1029 | 1068 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | SMART | WD40_4 | 1210 | 1249 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | SMART | WD40_4 | 1071 | 1108 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | SMART | dDENN_cls | 405 | 473 | IPR005112 | - | |
| Vvi17g344 | 1254 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 995 | 1035 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | PRINTS | G protein beta WD-40 repeat signature | 972 | 986 | IPR020472 | - | |
| Vvi17g344 | 1254 | PRINTS | G protein beta WD-40 repeat signature | 1013 | 1027 | IPR020472 | - | |
| Vvi17g344 | 1254 | PRINTS | G protein beta WD-40 repeat signature | 1055 | 1069 | IPR020472 | - | |
| Vvi17g344 | 1254 | Gene3D | - | 202 | 426 | IPR043153 | - | |
| Vvi17g344 | 1254 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 995 | 1029 | - | - | |
| Vvi17g344 | 1254 | Gene3D | - | 1040 | 1253 | IPR015943 | GO:0005515 | |
| Vvi17g344 | 1254 | SMART | uDENN_cls | 1 | 104 | IPR005113 | - | |
| Vvi17g344 | 1254 | MobiDBLite | consensus disorder prediction | 815 | 836 | - | - | |
| Vvi17g344 | 1254 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 1013 | 1027 | IPR019775 | - | |
| Vvi17g344 | 1254 | SMART | DENN_cls | 122 | 298 | IPR001194 | - | |
| Vvi17g344 | 1254 | Pfam | uDENN domain | 36 | 103 | IPR005113 | - | |
| Vvi17g344 | 1254 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 955 | 994 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | PANTHER | DENN DOMAIN-CONTAINING PROTEIN 3 | 4 | 297 | - | - | |
| Vvi17g344 | 1254 | PANTHER | DENN DOMAIN-CONTAINING PROTEIN 3 | 335 | 1254 | - | - | |
| Vvi17g344 | 1254 | MobiDBLite | consensus disorder prediction | 557 | 585 | - | - | |
| Vvi17g344 | 1254 | Pfam | DENN (AEX-3) domain | 124 | 290 | IPR001194 | - | |
| Vvi17g344 | 1254 | Gene3D | - | 1 | 176 | - | - | |
| Vvi17g344 | 1254 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 1118 | 1150 | IPR001680 | GO:0005515 | |
| Vvi17g344 | 1254 | PANTHER | C-MYC PROMOTER BINDING PROTEIN | 335 | 1254 | - | - | |
| Vvi17g344 | 1254 | PANTHER | C-MYC PROMOTER BINDING PROTEIN | 4 | 297 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g344 | - | - | - | vvi:100254135 | 2368.19 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g344 | . | . | . | . | . | Bpe13g00342 | Bma06g00001 | . | Cmo13g01072 | . | . | . | . | . | . | Cpe20g00113 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone2ag0645 | . | . | . | Lsi02g00171 | Csa01g00654 | Chy12g01446 | Cme12g01886 | . | . | . | . | . | . | . | . | Sed08g2171 | . | . | Cma13g01032 | . | Car13g00866 | . | . | . | Bhi08g01221 | Tan05g2280 | Cmetu12g2040 | Lac10g0223 | Hepe07g2408 | . | . | Cla04g01103 | Cam04g1156 | Cec01g1666 | Cco01g1712 | Clacu04g1183 | Cmu04g1163 | Cre01g1461 | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0012064 | 0 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 30 |