Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g346 ATGCCCGCATCTTCTTCTCCTATCCCCGTCGTCTCTAATTTCTGGAGAGAATTTGATTTAGAGAAGGAAAGGAGTGTGTTGGATGAACAAGGGCTTAGAATAGCTGAAAATCAGGAAAACAGCCAGAAAAATCGGCGGAAGCTTGCAGAGAGCACTCGAGATTTCAAGAAAGCTTCACCAGATGAGAAGTTAAATTTGTTTAATTCTTTACTAAAGGGTTATCAAGAAGAAGTTGATAATCTTACTAAGAGAGCAAAATTTGGAGAAAATGCTTTTCTTAACATCTACCAGAAACTTTATGAGGCTCCAGATCCTTATCCAGCTCTTGCTTCAATTGCTGAGCAAGATATGAAATTGTCTGAGCTAGAGTCTGAGAACCGGAAGATGAAAGTGGAACTTGAGGAGTTCAGGACAGAGGCAACTCATCTAAAGAATCAACAGGCAACAATAAGAAGACTTGAAGAGCGTAATCGCCAGTTAGAACAACAGATGGAGGAGAAGGTGAAGGAAATTGTGGAAATGAAGCAACGCAGTTTGGCAGAAGAGAACCAGAAGACACTAGAGGTTTTAAAAGAGAGGGAGCGATTATTGCAGGATCAATTACGACAAGCTAAAGAAAGTGTTTCTAATATGCAGAAACTACATGAACTTGCACAAAGCCAGATGTTTGAACTTCGTGCCCAATCAGAGGAAGATACAGCAGCAAAACAATCAGAAGTCAGCCTTCTAATGGATGAAGTTGAACGGGCTCAAACACTGCTTCTTAGCCTTGAGAGGGAGAAGGGACTTCTACGCTCCAAGTTACAGTCAGCAAACGATGAGAATGGACAAAAGAAGAGTGATAATCTAGATTCAAATAGTATACTTGAAAATTCTTTGAGTGCCAAAGAAAAGATTATCTCTGAGCTGAACATGGAACTTCACAACATCGAGATCACCTTATCCAATGAGCGAGAACAACACGTGAATGAGATCAAGAGGTTGAATGCATTGCTAAATGAAAAGGACCTTGCTCTGGAGGAGATCAAGAAGGAGCTTCTGGCAAGGCCAACAGCAAAATTAGTTGATGATTTACGTAAAAAAGTGAAAATTCTGCAGGCAGTTGGTTATAATTCAATTGAGGCAGAAGATTGGGAAGTTGCTACTAGTGGTGAGGAGATGAGTAAACTGGAGTCCCTTCTTCTTGATAAGAATCGGAAAATGGAACATGAACTCACACAGTTAAAGGTCAAACTTACGGAGAAAACATCTTTACTGGAAACAGCTGAAGGCAAAATAGTAGAACTTACAGCCAAGGTCAATGAACAACAAAGATTGATACAAAAGTTGGAAGATGATATATTGAAGGGTTATAGTTCGAAAGAAAGAAAAGGTAGTTTATTTGAAGATTGGGATCTATTGGATAATGGGGCAACAGAGACATCTCAGCGTGCAGAACAAAAACATGTTTCTCCAGATCAGGAACAAAACTCAATGCTTAAGGTGATCTGCAATCAGCGAGATCGGTTTAGAGCACGGTTGCGAGAGACAGAAGAGGAAGTAAAACAGTTGAAAGAGAAGATAGGGCTGCTAACAGTGGAACTGGAAAAAACGAAAGCTGACAATGTCAAACTCTATGGGAAGATTCGTTATGTCCAGGATTATAATCTTGAGAAAGTAGTTTCTAGAGGATCAAAGAAGCATTCAGAAGATCTTGAGAGTGGTTTCAGCTCAGATGTTGAATCCAAGTACAAGAAGATATATGAGGATGATATAAATCCCTTTGCTGCTTTCTCCAAAAAGGAAAGGGATCAAAGGTACAAGGAGTTGGGTATCAGGGATAAAATTACACTTAGCAGTGGGCGATTTCTTCTTGGCAACAGATATGCCCGGACATTCGCTTTCTTCTATACCATTGGGTTACATGTCCTGGTGTTCACCTGCCTATACAGAATGTCAGCTCTGAGCCATCTTAGCAATGGCCCCGAGGAATCCCTTATTGGACAGAAAATCATCAACCTCCCTCACGCACCTTGA 2016 40.58 MPASSSPIPVVSNFWREFDLEKERSVLDEQGLRIAENQENSQKNRRKLAESTRDFKKASPDEKLNLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDMKLSELESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEMKQRSLAEENQKTLEVLKERERLLQDQLRQAKESVSNMQKLHELAQSQMFELRAQSEEDTAAKQSEVSLLMDEVERAQTLLLSLEREKGLLRSKLQSANDENGQKKSDNLDSNSILENSLSAKEKIISELNMELHNIEITLSNEREQHVNEIKRLNALLNEKDLALEEIKKELLARPTAKLVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKLESLLLDKNRKMEHELTQLKVKLTEKTSLLETAEGKIVELTAKVNEQQRLIQKLEDDILKGYSSKERKGSLFEDWDLLDNGATETSQRAEQKHVSPDQEQNSMLKVICNQRDRFRARLRETEEEVKQLKEKIGLLTVELEKTKADNVKLYGKIRYVQDYNLEKVVSRGSKKHSEDLESGFSSDVESKYKKIYEDDINPFAAFSKKERDQRYKELGIRDKITLSSGRFLLGNRYARTFAFFYTIGLHVLVFTCLYRMSALSHLSNGPEESLIGQKIINLPHAP* 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3969398 3996695 + Vvi17g346 Vvi17g346 779043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g346 671 Coils Coil 64 91 - -
Vvi17g346 671 Coils Coil 180 221 - -
Vvi17g346 671 Coils Coil 240 274 - -
Vvi17g346 671 Pfam CASP C terminal 421 648 IPR012955 GO:0006891|GO:0030173
Vvi17g346 671 PANTHER HOMEOBOX PROTEIN CUT 8 656 - -
Vvi17g346 671 MobiDBLite consensus disorder prediction 39 55 - -
Vvi17g346 671 Coils Coil 112 177 - -
Vvi17g346 671 MobiDBLite consensus disorder prediction 31 55 - -
Vvi17g346 671 Coils Coil 325 345 - -
Vvi17g346 671 PANTHER CCAAT DISPLACEMENT PROTEIN-RELATED 8 656 - -
Vvi17g346 671 Coils Coil 493 534 - -
Vvi17g346 671 Coils Coil 419 446 - -
Vvi17g346 671 Coils Coil 300 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g346 K09313 CUTL; homeobox protein cut-like - vvi:100259260 1249.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g346 . . Bda06g00485 . . . . Bma12g00932 . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0272 . . . . . . . . . . Bpe07g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011821 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29