Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g349 ATGTACGGAGGCGATGAAGTATCGGCCATTGTGATTGACCTTGGTTCGCACACCTGTAAAGCGGGATACGCCGGCGAAGATGCTCCCAAGGCTGTTTTTCCCTCTGTTGTTGGATCAATTGATCAAATGGAAGTTGATGACCCGGCGAATACTGAGAATTCTGGATCTGGCAATGATTCCAAGAACACTGGCAGACCTTTTGATTCAGAAAAAAGCAAGGGAAAACGCAAATTGTATGTGGGCTCTCAAGCCCTTGGGCATCGCCGGGATCATATGGAGGTACTATCACCCATTAAGGATGGAGTAGTTGTTGATTGGGATATTGTTGACAGCATATGGGACCATGCTTTCAGCTTATCTATTTTGACCTACTCAACTTCTTACAGCATGTTTTGCTCTTTCTTTCTCTTTCCATCAAATCTTGCCCTACAAACCTGTTTATGTCAATCTTTTTTTTTTTTTTTGTTTAGCTTTTGTAAATCTAGGGAGGATTCCTCATTCTTCTCATGTATTTGCTTTATCCATTTCTAA 531 41.81 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMEVDDPANTENSGSGNDSKNTGRPFDSEKSKGKRKLYVGSQALGHRRDHMEVLSPIKDGVVVDWDIVDSIWDHAFSLSILTYSTSYSMFCSFFLFPSNLALQTCLCQSFFFFLFSFCKSREDSSFFSCICFIHF* 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4013613 4030933 + Vvi17g349 Vvi17g349 779046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g349 176 SUPERFAMILY Actin-like ATPase domain 4 130 IPR043129 -
Vvi17g349 176 MobiDBLite consensus disorder prediction 46 63 - -
Vvi17g349 176 PANTHER ACTIN 2 122 IPR004000 -
Vvi17g349 176 MobiDBLite consensus disorder prediction 45 76 - -
Vvi17g349 176 Pfam Actin 4 123 IPR004000 -
Vvi17g349 176 Gene3D - 3 140 - -
Vvi17g349 176 PANTHER - 2 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g349 K11340 ACTL6A, INO80K; actin-like protein 6A - vvi:100266467 236.498
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g349 . . . . . . . Bma12g00933 . . Cma10g00243 . Car10g00229 . . . . . . . . . . . Cla06g01479 Cam06g1633 Cec06g1696 Cco06g1690 Clacu06g1599 Cmu06g1548 Cre06g2360 . . . . . . . . . Blo15g00369 . . . . . . . . . . . . . . Cpe18g00750 . . . . . . . . . . . . . . Lsi06g01342 . Chy02g02375 Cme02g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068867 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1