Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g350 ATGCTTATTGGGTTGATCCTAAGAGCATCCAATGCTACTCGCGGAACCATCATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATGCTTATTGGTTGATCTTAAAGAGCATCCAATGCTACTCGCGGAACCATCATCTAACACTCAGCAACAAAGAGAAAGGACAGCCCAGCTCATGTTTGAAAAGTATGAAGTTCCTGCATTATTTTTGGCCAAGAATGCTGTTCTCACATCTTTTGCGTCAGGACGTGCTACGTCATTAGTTGTGGACAGTGGTGGAGGATCAACTACTGTTGCCCCTGTCCATGATGGTTATGTTCTTCAAAAGGCTGTGGCCTCTTCTCCTATTGGAGGAGAATTTCTTACTGAATGCATGATGAAAAGCTTGGAAAGTAAAGGCATTTCGATAAAGCCCAGATATTCTTTTAAAAGAAAGGAAACACGTCCAGGAGACTTTCAGACTGTTGATGTTGATTTTCCAAATACAACAGAAAGTTATAAGCTGTACTCCCAGAGGGTTATTGCTAGTGATATTAAGGAGTGCGTGTGCCGAGCCCCTGATACTCCATTTGATGAAAGCGCATATTCAAACATTCCGATGACACCATATGAACTTCCTGATGGGCAGACGATAGAAATTGGAGCTGACAGATTCAAGGTTCCTGATGTTCTGTTCAATCCATCCTTGGCTCAGACAATTCCAAACATGGAGAGTTTTGCGGATATTGCTCCATCTGTTCGTGGTTTGCCACAAATGGTTATAGAGAGCATTAATAAGTGCGATGTGGACATTCGAAGAGAACTGTTTAGTAGCATATTGCTTGCTGGTGGTACAGCATCAATGCAACAATTGAAGGAACGCCTTGAGAAAGACTTGCTGGAGGAGTCTCCGCAAACTGCTAGAGTCAAGGTATTGGCCAGTGGAAATTCAACAGAAAGGAGATTCAGTGTTTGGATAGGAGGGAGCATATTAGCATCTCTTGGTTCATTCCAGCAAATGTGGTTCTCCAAGGCTGAGTACGAGGAGCACGGGGCTTCTTACATTCAGCGGAAGTGCCCGTAA 1329 34.09 MLIGLILRASNATRGTIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECLLVDLKEHPMLLAEPSSNTQQQRERTAQLMFEKYEVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVASSPIGGEFLTECMMKSLESKGISIKPRYSFKRKETRPGDFQTVDVDFPNTTESYKLYSQRVIASDIKECVCRAPDTPFDESAYSNIPMTPYELPDGQTIEIGADRFKVPDVLFNPSLAQTIPNMESFADIAPSVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQTARVKVLASGNSTERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGASYIQRKCP* 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4031361 4061477 + Vvi17g350 Vvi17g350 779047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g350 442 PRINTS Actin signature 140 153 IPR004000 -
Vvi17g350 442 PRINTS Actin signature 165 184 IPR004000 -
Vvi17g350 442 SUPERFAMILY Actin-like ATPase domain 118 178 IPR043129 -
Vvi17g350 442 Coils Coil 117 117 - -
Vvi17g350 442 Gene3D - 163 405 - -
Vvi17g350 442 Gene3D - 119 435 - -
Vvi17g350 442 CDD NBD_sugar-kinase_HSP70_actin 124 201 - -
Vvi17g350 442 SUPERFAMILY Actin-like ATPase domain 171 441 IPR043129 -
Vvi17g350 442 PANTHER ACTIN 119 441 IPR004000 -
Vvi17g350 442 SMART actin_3 1 442 IPR004000 -
Vvi17g350 442 Gene3D Actin; Chain A, domain 4 205 335 - -
Vvi17g350 442 Coils Coil 18 18 - -
Vvi17g350 442 PANTHER - 119 441 - -
Vvi17g350 442 Pfam Actin 117 441 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g350 K11340 ACTL6A, INO80K; actin-like protein 6A - vvi:100266467 637.876
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g350 . . Bda06g00486 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0697 . . . . . . . . . . . Bpe07g00726 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00370 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009830 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 33