Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g356 ATGGCTGTGTCTTCCACAAAGCCAAATTCCCAGGCCAACATCCAAGACACTCAACCACTCCCCAAGAAGCAGCGGACCAAATCACCTGGAGTTCGAATCATTGGAGGCCGTATCTATGATTCTCAAAATGGCAAGACTTGTCACCAGTGTCGCCAAAAGACCATGGATTTTATGGCACCATGCAAGAACCAGGGGGAGAAGAAGCAATGTAGCTTTCGTTTTTGTCATAAATGCCTCTTGAACAGATATGGAGAGAAAGCGGAGGAGGCGGTAGCGTTGGATGAATGGAAATGTCCCAAGTGCAGAGGTATTTGCAATTGCAGCTTCTGCATGAAGAAGCGAGGCCATCGGCCAACTGGGATTCTTGTCCACACTGCAAAGGCAACTGGGTTTTCTTCAGTCTCTGAAATGCTGCAGTTTAAGGGCTCTGAAAATTCAGGTTCTGAGAGGTCTGTGCCAGATGAAGGCACCTCATTGACAGCTTCAAGTGAGGAGCTTGTGGTGGCCTTATCAGGAAGCAGAGAGAAAAATGGTTCTGATGGAAGAGATGATTCGAGAGTGCAGTCAATGCCTTTGCAAATGAATGGCAGTGCAAAAGAAACTAGAAATAGCAAGTCGAAATCAATAAGAAAAAAAGCTGACAATAGTATGTGTGAGCATAATGGGGATGATGGTGCATCTACAGGGAAAAGTTGTCCTAAGAAACCTCGGATTTCCAAGGAAGTATCTAAGAAAGAAGGAAAGATCCACAAAAGGGTCCAATTTAATAAATCGAATGCTGATATGCGTTTTCCCGACAAAACTTCTGCAGAGTCTATTGAAATAGAAGATAATGAGGCTACAGCACCTAGTTATGCAAATATTGATGGCCACAAAACCAAGCATAAGCCAGTGAAAAAATCATACGGGTGTAAAAGGAATACACTGGAAGTCCAAGGCAAAGATTCTCATGTTGAAATCCTGCTGCCTCAGGGCACTCAACTGAGCAGTGTGGCTTCCATTGACATGTTGGCTGAGGATGTTGGGCATGCCTTGCAATTCTTGGAATTTTGTGAAGCTTTTGGACAGGTTCTTGATCTAAAGAAAGGACAGCCTGAGTTGTTACTCAGAGAATTGGTATGTGGACAAAATAAACTTCAAAGGCTGGCCCCTTCGGTTGTCCGGTTCCATGTCCAACTGCTCTCAATGATACAGAAGAACTCAGAGAACAATTATCCTTCCTTATATCCCACAAGACGGGGAAATTCATGGTTGAAAGCTCTAAGTAGATGCATCTCTGAATCCCGGTTTCCACCAAGGGAACTTCAGTTGGATTGTGTTGACATGGATGGAGATGGATACAATAAGTTAAACTCCTCCAAAAAGCTCAGACTCTTGAATTTTCTATGTGATGAAGCTCTTGGCACAGTAGAATTAAGGAATTGGATTGATGTACAAAGCTCAAATTTTATTGAAAGAGAGAAGAAAGAAAAAGGAAAGTGCTCTGCATTGGAGAAAAACATGAAGAAGCGGCTGCAGGATGAGATGGCCAAAGCTCTTCTCATGAAAAATGGTGCTCCTCTTTCCATTTCTGAATATGATGATCTTGTTTCAAAAATAAAAACGGAAGTAGCCCAGACTTTTGCAGAAACTGTAGAAGCAACAGATCCCAAGAAGAAACAACGCTCTGATGCTGTTAGATCAGAGCCGATATTTGTGGATGGGAACGGTCGCAAGTTCTGGAGATCGAGTTGCTGCTCTAGTGATGTGGATATTCTGCTTCAAGATGTTGGAAACAGTGATCCAGCTACATACGAAGAAAAATGGTTTACCTATCATGTTGAACAGAAGGCAACAGTTGAGAGCTATATTTCATCTTTAAGGAAGCTAAGAAAATGA 1878 42.71 MAVSSTKPNSQANIQDTQPLPKKQRTKSPGVRIIGGRIYDSQNGKTCHQCRQKTMDFMAPCKNQGEKKQCSFRFCHKCLLNRYGEKAEEAVALDEWKCPKCRGICNCSFCMKKRGHRPTGILVHTAKATGFSSVSEMLQFKGSENSGSERSVPDEGTSLTASSEELVVALSGSREKNGSDGRDDSRVQSMPLQMNGSAKETRNSKSKSIRKKADNSMCEHNGDDGASTGKSCPKKPRISKEVSKKEGKIHKRVQFNKSNADMRFPDKTSAESIEIEDNEATAPSYANIDGHKTKHKPVKKSYGCKRNTLEVQGKDSHVEILLPQGTQLSSVASIDMLAEDVGHALQFLEFCEAFGQVLDLKKGQPELLLRELVCGQNKLQRLAPSVVRFHVQLLSMIQKNSENNYPSLYPTRRGNSWLKALSRCISESRFPPRELQLDCVDMDGDGYNKLNSSKKLRLLNFLCDEALGTVELRNWIDVQSSNFIEREKKEKGKCSALEKNMKKRLQDEMAKALLMKNGAPLSISEYDDLVSKIKTEVAQTFAETVEATDPKKKQRSDAVRSEPIFVDGNGRKFWRSSCCSSDVDILLQDVGNSDPATYEEKWFTYHVEQKATVESYISSLRKLRK* 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4155404 4159947 + Vvi17g356 Vvi17g356 779053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g356 625 MobiDBLite consensus disorder prediction 1 24 - -
Vvi17g356 625 MobiDBLite consensus disorder prediction 184 202 - -
Vvi17g356 625 MobiDBLite consensus disorder prediction 1 30 - -
Vvi17g356 625 MobiDBLite consensus disorder prediction 140 167 - -
Vvi17g356 625 MobiDBLite consensus disorder prediction 203 219 - -
Vvi17g356 625 ProSiteProfiles DDT domain profile. 338 403 IPR018501 -
Vvi17g356 625 MobiDBLite consensus disorder prediction 140 246 - -
Vvi17g356 625 PANTHER OS05G0300700 PROTEIN 14 620 IPR040221 GO:0006355
Vvi17g356 625 SMART testlast3 338 403 IPR018501 -
Vvi17g356 625 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 39 138 IPR018866 -
Vvi17g356 625 PANTHER OS05G0300700 PROTEIN 14 620 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g356 - - - vvi:100242396 1253.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g912 Vvi17g356 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g356 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006632 1 3 1 0 0 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 1 1 1 2 2 1 1 3 2 3 38