Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g359 ATGAATAAATTGATAGGAATGGATATAATTGGTGAGACAAAGTACAAATACAACAAAATAGAGGGGTTAAATGCAAAATCTCCGGCTCTCAACGAGTTAGATCGATACGGGGCTCAGTCACCTTCCTCGCTGCCCGAATTTGCTGTGAGCATCAGAGCTGCTCTACCAGGGTCACTCTCTGGTGCCAAGGTCTGGCCTTCCAAGTGCAAAAGAACATGTTCGAGTTTTATGAGGGGATGTGACCAGAACCAGGATCTTCATGAAGGAATGATTCTGAATGAAACTTGTTATGTGAATTCTGAACATAACATGGTCTCGGAAACGCTACAAAATACTCGGCTGATGGATGGAAAGGCTGAAAACAATCTTCATGATCAAAATGATCAAATTCTACTGGAAGGCTTTAATGGACAGCATGAAAATGTGGGGTTGGATGGGATTAATGCTACTCCCTGTTCTGATGAAAATTGTCGGGAAGAAAATACATCAGGAACATCCAGTAGAGATATGGCAGACAATCTAAATGGAAGCATGCTACCAGATATTATATCTAAAAGAGTGAGGCAGCAGAAAGAAATGACTTTGGAAGATATGTATAATGACCAATATGATTATGATGATGACGATGATAGTGATTGGGAGCCCTTGCCGGGGCCTACAGCAGTCATAAGGTGGTTTTGTGTCAATTGTACGATGGCTAACCAAGACGATGTTGTACATTGTGATATATGTGGGGAACATAAAGAATCCGGAATCCTCAAGCATGGGTTTTTTGCATCACCTTTTTCACAAGAAGCAGGCCTTATTCATACTGATTCAGAAGTAGTAGAAAGATGCCAAGACTCACGCTCACCAAATCTCACCTCAAACAACTCCACTGCTGTGGGTTTTGATGAGAGAATGTTGCTGCACTCTGAAGTTGAAATGAAGTCACACCCACACCCAGAAAGGCCAGACCGTCTTCGAGCTATTGCTGCTAGCCTTGCTACTGCAGGTATATTTCCTGGAAAATGCTACCCAATTTTGGCAAGAGAGATTACTCGAGAAGAACTGCAGATGGTCCATTCTTTGGAGCATGTTGAAACTGTAGAACTTACAAGCCGTATTCTTTCGAGTTATTTCACTCCTGATACATATGCTAATGAGCATTCAGCACTTGCTGCTCGGCTTGCAGCTGGTTTATGTGCTGATCTTGCTTCTGCAATTTTTTCTGGACGTGCCAAAAATGGTTTTGCTTTGGTTCGCCCTCCTGGTCATCATGCTGGTGTTAGTCAGGCGATGGGGTTCTGCCTCCACAATAATGCGGCGGTTGCTGCACTAGCTTCACAGGTTTCAGGGGCTAAGAGGGTGCTAATTGTTGATTGGGATGTACATCACGGAAATGGCACACAAGAGATATTTGAGCAGAACAAATCGGTTTTGTATATATCCTTGCATAGACATGAAGGGGGAAACTTCTATCCTGGTACTGGGGCATCACACGAGGTGGGCAGTATGGGTGCAGAAGGATACTGTGTGAATATTCCATGGAGTCGTGGAGGAGTTGGGGACAATGATTATATTTTTGCATTCCAGCATGTTGTGCTTCCTATAGCTTCTGAGTTTGCTCCTGATTTCACCATAATATCAGCAGGATTTGATGCTGCAAGGGGTGATCCCCTTGGTTGCTGTGATGTAACACCTGCTGGCTTTGCAAAGATGACAGATATGTTGAATGTTCTCTCTGGTGGAAAGTTGCTTGTTATTCTTGAGGGCGGCTATAATCTTCGTTCAATATCATCATCTGCCACTGCAGTGATCAAGGTACTGCTTGGTGAAACTCCTGGATGCGAATTGGATAACTGCTTGCCTTCCAAGTCTGGCTTGCGAACTGTTCTGGAAGTCCTGAAAATTCAGATGAACTTCTGGTCTACTCTGGCATCGACCCTTACAAAATTGGAGTCAGAATGGGGATCATGTTTAGTTGAAAACCGAAAAAAGCATACTAAAAAGAGACGGCGGGCTGTGGCACCAAAACCATGGAAATGGGGGCGAAAAACTTTGTTATATCATCTTCTGTCTGGCCATCTTCGTTACAAATCAAAGCGGATTTAG 2094 43.6 MNKLIGMDIIGETKYKYNKIEGLNAKSPALNELDRYGAQSPSSLPEFAVSIRAALPGSLSGAKVWPSKCKRTCSSFMRGCDQNQDLHEGMILNETCYVNSEHNMVSETLQNTRLMDGKAENNLHDQNDQILLEGFNGQHENVGLDGINATPCSDENCREENTSGTSSRDMADNLNGSMLPDIISKRVRQQKEMTLEDMYNDQYDYDDDDDSDWEPLPGPTAVIRWFCVNCTMANQDDVVHCDICGEHKESGILKHGFFASPFSQEAGLIHTDSEVVERCQDSRSPNLTSNNSTAVGFDERMLLHSEVEMKSHPHPERPDRLRAIAASLATAGIFPGKCYPILAREITREELQMVHSLEHVETVELTSRILSSYFTPDTYANEHSALAARLAAGLCADLASAIFSGRAKNGFALVRPPGHHAGVSQAMGFCLHNNAAVAALASQVSGAKRVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGNFYPGTGASHEVGSMGAEGYCVNIPWSRGGVGDNDYIFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGCCDVTPAGFAKMTDMLNVLSGGKLLVILEGGYNLRSISSSATAVIKVLLGETPGCELDNCLPSKSGLRTVLEVLKIQMNFWSTLASTLTKLESEWGSCLVENRKKHTKKRRRAVAPKPWKWGRKTLLYHLLSGHLRYKSKRI* 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4195886 4225096 + Vvi17g359 Vvi17g359 779056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g359 697 PANTHER HISTONE DEACETYLASE 133 695 - -
Vvi17g359 697 PRINTS Histone deacetylase superfamily signature 416 439 IPR000286 -
Vvi17g359 697 PRINTS Histone deacetylase superfamily signature 449 464 IPR000286 -
Vvi17g359 697 PRINTS Histone deacetylase superfamily signature 537 547 IPR000286 -
Vvi17g359 697 MobiDBLite consensus disorder prediction 153 175 - -
Vvi17g359 697 Gene3D Histone deacetylase domain 290 643 IPR037138 -
Vvi17g359 697 ProSitePatterns Zinc finger RanBP2-type signature. 225 244 IPR001876 -
Vvi17g359 697 SUPERFAMILY Arginase/deacetylase 290 636 IPR023696 -
Vvi17g359 697 CDD HDAC_classII 314 604 - -
Vvi17g359 697 PANTHER HISTONE DEACETYLASE-RELATED 133 695 - -
Vvi17g359 697 MobiDBLite consensus disorder prediction 154 173 - -
Vvi17g359 697 Pfam Histone deacetylase domain 314 602 IPR023801 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g359 - - - vvi:100268092 1228.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g359 Blo04g00809 . . Bda15g00544 Bpe12g00667 . . . . . Cma10g00300 . Car10g00285 . . . . . . . . . . . . . . . . . . . . Cone13ag0296 . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00322 . . . . . . . . . . . . . . . . . . . . . . Csa01g00287 Chy02g02448 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005291 1 4 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 4 2 1 40