Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g360 ATGTCAAGTGAAGTTCCAGTATGGAGCAGAGAGGAAGAGAAGGCTTTCGAGAATGCTATTGCCATGCACTGGACCGAAGACTGCAAGGAGGTGTGGGACAAGATTGCTTCCATGGTTCCTGGCAAGAGCGTTGATGAGCTGAAGCAACACTACCAATTTCTCGTTGAGGATGTGAATGCAATTGAGGCTGGTCATATCCCACTTCCCAACTATGCTGCCGATGAAGCCTCGTCGGAGCAGGAGCGGCGGAAAGGCATTCCATGGACAGAAGAGGAGCATAGGCTGTTTCTACTGGGTCTGGACAAGTTTGGAAAAGGGGATTGGAGAAGCATTTCCAGGAACTTTGTAATCTCCAGGACTCCCACTCAAGTGGCGAGCCACGCACAGAAGTACTTTATTCGCCTGAATTCCATGAACAGGGATAGGAGGAGATCCAGTATCCATGACATTACAAGTGTGAACAATGGCGATGTGTCAACCCCTCAAGCTCCAATTACCGGCCAGCAGGGCAACGGCAACCCAGCAAGCGCAGCTGCAGCTGGTGTGGGACCACCCCTGAAGCACCACAGGGCTCAGCCAAGCATGCCAGCAGGTGCTCTGGGAATGTATGGAACACCTATGGGACATCCAGTGGCCGCTCCTCCAGGGCATATGGCATCAGCAGTTGGGACTCCTGTTATGCTTCCTCCTGGACCCCATGCACCTCCCTATGTTGTCCCAGTTGCTTACCCCATGGCACCACCTCCAATGCACCAATAG 759 52.96 MSSEVPVWSREEEKAFENAIAMHWTEDCKEVWDKIASMVPGKSVDELKQHYQFLVEDVNAIEAGHIPLPNYAADEASSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVSTPQAPITGQQGNGNPASAAAAGVGPPLKHHRAQPSMPAGALGMYGTPMGHPVAAPPGHMASAVGTPVMLPPGPHAPPYVVPVAYPMAPPPMHQ* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4225512 4226967 - Vvi17g360 Vvi17g360 779057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g360 252 Pfam Myb-like DNA-binding domain 87 132 IPR001005 -
Vvi17g360 252 Pfam Myb-like DNA-binding domain 8 52 IPR001005 -
Vvi17g360 252 SUPERFAMILY Homeodomain-like 82 137 IPR009057 -
Vvi17g360 252 ProSiteProfiles Myb-like domain profile. 80 132 IPR001005 -
Vvi17g360 252 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 84 134 IPR006447 GO:0003677
Vvi17g360 252 SMART sant 4 57 IPR001005 -
Vvi17g360 252 SMART sant 84 134 IPR001005 -
Vvi17g360 252 CDD SANT 87 132 IPR001005 -
Vvi17g360 252 ProSiteProfiles SANT domain profile. 88 136 IPR017884 -
Vvi17g360 252 ProSiteProfiles SANT domain profile. 3 59 IPR017884 -
Vvi17g360 252 PANTHER TRANSCRIPTION FACTOR KUA1 1 72 - -
Vvi17g360 252 PANTHER TRANSCRIPTION FACTOR KUA1 76 251 - -
Vvi17g360 252 PANTHER TRANSCRIPTION FACTOR MYBS1 76 251 - -
Vvi17g360 252 PANTHER TRANSCRIPTION FACTOR MYBS1 1 72 - -
Vvi17g360 252 CDD SANT 8 52 IPR001005 -
Vvi17g360 252 SUPERFAMILY Homeodomain-like 6 61 IPR009057 -
Vvi17g360 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 136 IPR017930 -
Vvi17g360 252 MobiDBLite consensus disorder prediction 143 192 - -
Vvi17g360 252 ProSiteProfiles Myb-like domain profile. 8 55 IPR001005 -
Vvi17g360 252 Gene3D - 86 138 - -
Vvi17g360 252 Gene3D - 2 68 - -
Vvi17g360 252 MobiDBLite consensus disorder prediction 149 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g360 - - - vvi:100245771 441.039
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g360 . . Bda06g00488 Bda15g00658 Bpe12g00497 . . . . . Cma10g00245 Cma11g00261 Car10g00232 . . . Cpe04g01413 . . . . . . . Cla06g01481 Cam06g1636 Cec06g1698 Cco06g1694 Clacu06g1602 Cmu06g1551 Cre06g2364 . . Cone13ag0297 Cone19ag0268 . . . . . . . . . . . . . Cmo10g00264 Cmo11g00267 . . . . . Cpe18g00747 . . . . . . . . . . . . . . Lsi06g01345 Csa01g00367 Chy02g02377 Cme02g01760
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006249 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14190 PF00249 Myb_DNA-binding 1.10E-10 CL0123 Vvi TF