Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g362 ATGACTGTTTTGTCTGTGAGTACTCCTCCGGCTCCTCAGGCTCCTCTGGCGGCCACCGGACCTCGGACACTGGTGGTGGGTGCATCCGGGTTCATAGGGCGGTTTGTGGCGGAAGCCAGCCTCTCCTCCGGCCACCCCACCTATGTCCTAGTCCGCTCCTCCGCCACGACCTCCTCTTCCAAGGCCAGCACCATCAAGTCCCTCGAAGACCAGGGCGCCATCCTTGTTACCGGTTCAATAGGGGACAAGGAAGTAATGATAGAGATTCTGAGGAAGTATGAGATAGAAGTGGTGATATCAGCTGTGGGTGGAGCCACTATATTGGACCAGCTCACCCTAGCGGAAGCCATTAAAGCGGTTGGTAGCATTAAGAGGTTCCTTCCATCAGAATTTGGGCACGACATCGACCGAGCGGAACCAGTGGAGCCGGGGCTGACCATGTACATGGAGAAGAGAAAAGTCAGACGGTTCATTGAGGAGGCCGCCATCCCCTACACCTACATCTGCTGCAACTCCATCGCCGCTTGGCCCTACCATGACAATACCCACCCTGCTGACGTCCTCCCACCCTTGGATCGTTTCCATATCTACGGTGATGGCTCTGTCAAAGCTTACTTCGTGGCGGGTACCGACATCGGAAAATTCACAATCAAAACCATAAACGACGATCGAACAGTGAACAAATCGCTTCATTTCCGACCTCCCAGCAATCTTGTAAGCATAAACGAGCTGGCATCACTGTGGGAGAAGAAGATCGGGCGGACGCTCCCCCGTGTAACCGTGGAAGAAGATGACCTACTAGCCGCTGCCGCAGAGATGTGCATTCCCGATAGCATCGTCGCGTCCTTCACTCACGACATCTTCATAAAGGGATGCCAAGTAAATTTCAGCTTGGATAAACCTACAGACCTAGAAGCCACGTCTCTTTATCCGGAGATGCAGTTCAGGACCATAGATGAGTGCTTCGATGAGTTCGTGGAGAAGATAATGGGAGGTCAAGCAGCAGCCGAGAAGGAGGGCATTGTGGTGCCCGCTTCTGCCCCGGATGCTTTGGTCATCACTGCTACCTGCGCCTGA 1077 54.04 MTVLSVSTPPAPQAPLAATGPRTLVVGASGFIGRFVAEASLSSGHPTYVLVRSSATTSSSKASTIKSLEDQGAILVTGSIGDKEVMIEILRKYEIEVVISAVGGATILDQLTLAEAIKAVGSIKRFLPSEFGHDIDRAEPVEPGLTMYMEKRKVRRFIEEAAIPYTYICCNSIAAWPYHDNTHPADVLPPLDRFHIYGDGSVKAYFVAGTDIGKFTIKTINDDRTVNKSLHFRPPSNLVSINELASLWEKKIGRTLPRVTVEEDDLLAAAAEMCIPDSIVASFTHDIFIKGCQVNFSLDKPTDLEATSLYPEMQFRTIDECFDEFVEKIMGGQAAAEKEGIVVPASAPDALVITATCA* 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4274452 4277479 + Vvi17g362 Vvi17g362 779059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g362 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 325 IPR036291 -
Vvi17g362 358 PANTHER PINORESINOL REDUCTASE-RELATED 14 336 - -
Vvi17g362 358 Pfam NmrA-like family 24 255 IPR008030 -
Vvi17g362 358 Gene3D - 22 312 - -
Vvi17g362 358 Gene3D - 172 322 - -
Vvi17g362 358 CDD PCBER_SDR_a 24 321 IPR045312 GO:0016491
Vvi17g362 358 PANTHER LEUCOANTHOCYANIDIN REDUCTASE-LIKE 14 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g362 K13081 LAR; leucoanthocyanidin reductase [EC:1.17.1.3] - vvi:100233112 673.315
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g257 Vvi17g362 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015267 1 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 2 12