Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g363 ATGAGCTGGCGAAGAGTGGCGAAGTCCCTGCAGGCTCTCACAGCCCATTCCTTGCTTCTCTCCTTCACCCTTCTTCTCGTCCTCAAGCTCCATCACACCATATCCTACTCTTGGTGGATTATCTTTTTCCCACTTTGGCTATTTCATGCAGTTGTTGCTCGAGGAAGATTCTCTTTGCCTGCCCCACTAGTTCCACATAATCGTCATTGGGCACCATGTCATGCTGTTGTTGCAACACCGCTGCTTATTGCATTTGAACTTCTCCTTTGTATATATCTCGAAAGCATTTATGCTTATGGTCATGCAGCTGTGAACTTGAAGATCATCTTTCTTCCCTTGTTGGCCTTTGAAATAACAATACTAGTTGACAATTTCAGAATGTGTAAGGCGCTAATGCCAGGAGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAGACACTTCCTCACTTTTGGGTTGCAATCTCCATGGTCTTCTTTGTTGCTGCTACATTGTTCACCCTTCTAAAGCTATGTGGTGATATAGGTGCTCTAGGCTGGTGGGACTTGTTCATAAATTTTGGCATTGCAGAGTCCTTTGCCTTCCTTGTTTGTACAAAGTGGTCTAATCCAGTGATCCATAGAAATTCTCACACAACAGAAGCTGGTTCATCTTCTACAACTATTAGATATCTTGACTGGAACAGTGGTTTAGTAGTTTCTACAGATGAGGATCAGCACCAGGATAGAATGTGTGGGCTGCAAGACATTGGTGGTCATATCATGAAAGTTCCATTAATTGGATTCCAAGTCCTTCTTTGTATGCGCTTAGAGGGAACACCTGCTGCTGCTAGAGATATCCCAATTCCAGTTCTTTTTTCACCTATTTTCTTACTTCAAGGCGCTGGGGTTCTGTTTTCTGCATCAAGGTTGGTTGAGAAAATTGTTCTTTTACTACATAATGGAGCTGGGACAGGAAGATATTTTACATATTCTTCTAGAGCTCATGATTGCTTTGGGTTCCTGCACCATGGTTCCAGGCTCCTGGGTTGGTGGTCCATTGATGAAGGAAGTCGTGAAGAACAGGCACGACTTGTCCATGATGGGGCAGGATATAACACTTTCTGTGGTTATCCTCCTGAGATAGTGAAGAAAATGCCTAAGAAGGATCTTGCTGAGGAGGTGTGGAGACTTCAAGCTGCACTTGGTGAGCAATCAGAAATCACAAAGTACAGTAAGCAGGAGTATGAAAGACTTCAAAATGAAAAAATTTTATGTAGAATTTGCTTTGAAGGAGAGATCAGCGTGGTTCTTCTTCCATGCAGGCATCGTATCCTTTGCAGTACCTGCTGCGAGAAGTGTAAAAAATGCCCAATTTGCCGTGTCCCAATCGAGGAACGCTTACCTGTGTATGATGTATAG 1401 43.33 MSWRRVAKSLQALTAHSLLLSFTLLLVLKLHHTISYSWWIIFFPLWLFHAVVARGRFSLPAPLVPHNRHWAPCHAVVATPLLIAFELLLCIYLESIYAYGHAAVNLKIIFLPLLAFEITILVDNFRMCKALMPGDEESMSDEAIWETLPHFWVAISMVFFVAATLFTLLKLCGDIGALGWWDLFINFGIAESFAFLVCTKWSNPVIHRNSHTTEAGSSSTTIRYLDWNSGLVVSTDEDQHQDRMCGLQDIGGHIMKVPLIGFQVLLCMRLEGTPAAARDIPIPVLFSPIFLLQGAGVLFSASRLVEKIVLLLHNGAGTGRYFTYSSRAHDCFGFLHHGSRLLGWWSIDEGSREEQARLVHDGAGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQSEITKYSKQEYERLQNEKILCRICFEGEISVVLLPCRHRILCSTCCEKCKKCPICRVPIEERLPVYDV* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4277598 4305670 - Vvi17g363 Vvi17g363 779060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g363 466 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 466 - -
Vvi17g363 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 464 IPR013083 -
Vvi17g363 466 ProSiteProfiles Zinc finger RING-type profile. 419 454 IPR001841 -
Vvi17g363 466 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 466 - -
Vvi17g363 466 SUPERFAMILY RING/U-box 410 461 - -
Vvi17g363 466 Pfam Zinc finger, C3HC4 type (RING finger) 417 459 - -
Vvi17g363 466 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g256 Vvi17g363 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g363 - - vvi:100256061 941.799