Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g367 ATGGCGAAGCCTCGCAAGCCGAAGACCGACGACAACACGAAGCCCGAGAATTCCAATTCTCGAGCCGTGGTTCGTCACCAAAAGCTCTGCCTTTCTATCGATATCGACAAGCGGCGGATTTACGGTTACACCGAGTTGGAAATTGCTGTTCCGGATATTGGGATTGTTGGGTTACATGCTGAAAATTTAGTGATCGAGAGTGTGTCTGTTGATGGAGAGCCTACTGAATTTGAATTTTACCCACATCATCAACATACTGAAAGTGAGAAAAGATGGAGCTCGGTCTTATCGGCTAGTTCAGCTGCTGACGTTGCAAGTTCGATGTATGTTTCAGCTCTTGAGAGAGAATTGGATCCAAACTTACTGATCATGTGTTGTAAACCTGAAAAGTCAGCCAGTGAACAGCAAGGTCAACAGAGTTTGGAGAATGGGTTGCATTCCTCTGGTGAACCCAAGCAGCACCAAGACGCTTTGAATTTACAATTAAACTATCAACTCAAGATACATCCCATGCTGCTCCGAGAATCCTCTGATTTCCATGTGATCTCTGGATGTATAGGGTCTTACAAAGAAAATGCCTTTTGTGGAGGCTTTTTGTACCAATTAATCATAATAGAGTTGACTCGGATGGTGGTTGAGTTCAAAACTATAATATTTGGAGCTGGGGATACCCGTTCCTTTTCTAATTGGAGTATTTTTGGATTCATGGCTAATATTTTTGAAACCTCTCAACTGCTGAATGACTTTACTAGGCAAATGGTTTCAAAAAAATGCAAGGAAAGATATTTTTATAGAAAAAGGTTATCCAAAGCAAATTTGGATAGTTGCAAGGATTCAAATCTTAAGGAAGCCAGAGAGGGTATGGGGTTGGTCACTGTAAAGCCAGTTGAAAAGGCTGGGAAGCTTTTCAAGCTTGTACAAAATGTGAAATTGGTTCGTGTTGACTATTGGGTGGAGAGGGCAGAGACAGGGATTCATTTTGAGGATAATGTGCTACACACTGATAACCAGATTAGGCGTGCACGCTGTTGGTTCCCTTGTATGGATGATACTTCACAGTGTTGCTGCTATGATCTGGAATTTACAGTGGCCCATAATCTTGTGGCTGTCAGCACTGGAAGCTTACTTTATCAGGTGTTAAGCAAAGATGACCCTCCTAGAAAAACATATGTCTATAAGTTAAATGTTCCAGTTACTGCAAGGTGGATACAATTGGCAGTTGCACCCTTTGAAGTACTTCCTGACCGCCATAGTGGTCTTCTTTCATACCTGTGTTTGCCAGCTAATTTACCCAAGCTTTGGAATACTGTGGGTTTCTTCCATAGTGCATTTAGCCATTATGAGGATTATCTTTCTGCATCATTTCCATTTGGATCATACAAGCAAGTCTTTATTGCTCCTGAAATGGCAATATCCTCATTGACATTGGGAGCCTCCATGAGCATCTTTAGTTCTCAAATTCTATTTGATGAGAAGGTTATTGATCAGCAGACAATAGATACGAGGATTAAACTTGCTTATGCCCTTGCAAGGCAATGGTTTGGAGTATTTATCAGTCCTGAGGCACCAAATGATGAGTGGTTGTTGGATGGTCTTGCTGGTTTTCTGACTGATTCATTTGTTAAGCGATTTCTGGGAAATAATGAGGCACGCTACCGGAGATACAAGGTTTGCTTTCTTATGGGGGCTTTCACATTTGGTTTACCTTATATAAGTTGTCTTTTGATTGACTTATATAACATTAGTGAATTTAATCACATCACCAAGTGCAATTTTGGATGTAGCTTAAACAAACCTTTCCCGCTTATTGTGTTTGCTCAAACCAAGCTCCTGGTTAGATTGAGTTTGTTTGGTTATTCTTTGCAGGCAAATTGTGCTGTTTGCAAAGCAGATGATAGTGGCGCAACTGCTTTGAGCTCTTCTGCTTCTTGTAAGGATTTATATGGAACCCAGTGCATTGGCTTATATGGAAAAATAAGATCATGGAAGTCTGTTGCAATCCTTCAAATGTTGGAAAAACAGATGGGCCCCGAGTCCTTCCGTAAGATTTTGCAGACTATAGTTTTTCGGGCTCAAGATACAACTCGTTCTTTGAGAACTCTTAGTACGAAGGAGTTCCGACATTTTGCCAATAAGGTTGGAAATCTTGAGCGCCCATTTCTTAAAGAATTTTTTCCTCGCTGGGTAGGATCTTGTGGGTGTCCTGTACTAAGGGCGGGTTTATCCTATAACAAGCGAAAAAATTTGGTTGAACTGGCGGTATTACGGGGATGCACTGCCGCACCAGATACAAATACAATGGTTCTTAATGGCAATATTGATTCTGAAAATCGAGAAGTTGATATTGGATGGCCAGGAATGATGAGCATCAGGGTTCATGAGCTTGATGGTATGTATGACCATCCAATTTTGCCAATGGCTGGAGAAACTTGGCAACTTCTTGAAATTCAGTGCCATTCAAAACTTGCTGCTAGACGCTTCCAGAAGCCTAAAAAGGGGTCAAAACCTGATGGCTCCGATGATAATGGTGATGTACCTGCTGTGGATATGCGCTCCAACACCGAATCCCCTTTGTTATGGCTTAGGGTAGACCCTGAACTGGAGTATCTTGCTGAAATTCATTTTAATCAACCTGCACAGATGTGGATTAATCAATTAGAGAGGGACAAGGATGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTCTGAATAATTTCCTCAGCGATTCGAAGGCCTTTTGGAGAGTCCGAATTGAGGCAGCATTTGCATTGGCTAATACAGCATCCGAGGAAACTGATTGGGCTGGTTTACTACATCTGGTTAAATTTTATAAAAGTCGGAGATTCGATGCAAACATTGGACTCCCCAAGCCAAATGACTTTCATGACTTTCCTGAGTATTTTGTTCTTGAGGCCATTCCGCATGCAATAGCTATGGTTAGAGCCGCAGATAAGAAAAGCCCAAGAGAAGCTGTTGAGTTTGTTTTACAACTTCTGAAGTATAACGATAATAATGGGAATCCTTACTCTGATGTATTCTGGCTTGCTGCACTAGTGCAGTCAGTTGGGGAACTTGAATTTGGGCAACAGAGTATTCTCTTTTTATCATCTCTTCTCAAGCGCATCGATCGGCTTTTGCAATTTGACAGGCTGATGCCAAGTTACAATGGGATATTGACAATCAGCTGCATCCGAACCTTGACACAGATTGGGTTGAAGCTTTCTGGATTTATCCCTCTTGATCGTGTCATTGAACTTGTTAAACCATTTCGGGACTTCCAGGCAATATGGCAAGTCCGAATTGAAGCAAGCAGAGCACTCCTAGGTCTAGAATTCCATTTCAAGGGCATTGATGCAGCATTATCCTTATTCATTAAATATGTAGAGGAAGAACCATCCATAAGAGGACAAGTAAAGCTTGGAGTGCATGCCATGCGGTTATGTCAGATAAAAGGTGGATCTGAATCTGACAATGACATAAAGAGTTCAACTCTTGTGGCATTGCTTCGTCTACTTGAAAGCCGTATAGCATTCAACAATGTCTTCCTTCGGCACCACTTGTTCTGCATTTTACGAATCCTTGCTGGAAGGCTCCCAACACTTTATGGAGTTCCAAGAGATCAAATCCCGCAAATGGACCCTGCAGAGATCTGGAAGCTGATACTGTTTCCAACAGCCATGAACGGAAAATGCCAGTAG 3738 41.87 MAKPRKPKTDDNTKPENSNSRAVVRHQKLCLSIDIDKRRIYGYTELEIAVPDIGIVGLHAENLVIESVSVDGEPTEFEFYPHHQHTESEKRWSSVLSASSAADVASSMYVSALERELDPNLLIMCCKPEKSASEQQGQQSLENGLHSSGEPKQHQDALNLQLNYQLKIHPMLLRESSDFHVISGCIGSYKENAFCGGFLYQLIIIELTRMVVEFKTIIFGAGDTRSFSNWSIFGFMANIFETSQLLNDFTRQMVSKKCKERYFYRKRLSKANLDSCKDSNLKEAREGMGLVTVKPVEKAGKLFKLVQNVKLVRVDYWVERAETGIHFEDNVLHTDNQIRRARCWFPCMDDTSQCCCYDLEFTVAHNLVAVSTGSLLYQVLSKDDPPRKTYVYKLNVPVTARWIQLAVAPFEVLPDRHSGLLSYLCLPANLPKLWNTVGFFHSAFSHYEDYLSASFPFGSYKQVFIAPEMAISSLTLGASMSIFSSQILFDEKVIDQQTIDTRIKLAYALARQWFGVFISPEAPNDEWLLDGLAGFLTDSFVKRFLGNNEARYRRYKVCFLMGAFTFGLPYISCLLIDLYNISEFNHITKCNFGCSLNKPFPLIVFAQTKLLVRLSLFGYSLQANCAVCKADDSGATALSSSASCKDLYGTQCIGLYGKIRSWKSVAILQMLEKQMGPESFRKILQTIVFRAQDTTRSLRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGSCGCPVLRAGLSYNKRKNLVELAVLRGCTAAPDTNTMVLNGNIDSENREVDIGWPGMMSIRVHELDGMYDHPILPMAGETWQLLEIQCHSKLAARRFQKPKKGSKPDGSDDNGDVPAVDMRSNTESPLLWLRVDPELEYLAEIHFNQPAQMWINQLERDKDVVAQAQAIATLEALPQLSFSVVNALNNFLSDSKAFWRVRIEAAFALANTASEETDWAGLLHLVKFYKSRRFDANIGLPKPNDFHDFPEYFVLEAIPHAIAMVRAADKKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIGLKLSGFIPLDRVIELVKPFRDFQAIWQVRIEASRALLGLEFHFKGIDAALSLFIKYVEEEPSIRGQVKLGVHAMRLCQIKGGSESDNDIKSSTLVALLRLLESRIAFNNVFLRHHLFCILRILAGRLPTLYGVPRDQIPQMDPAEIWKLILFPTAMNGKCQ* 1246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4393225 4459556 - Vvi17g367 Vvi17g367 779064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g367 1245 Gene3D Neutral Protease Domain 2 416 589 IPR027268 -
Vvi17g367 1245 MobiDBLite consensus disorder prediction 1 15 - -
Vvi17g367 1245 Gene3D - 876 1189 IPR011989 -
Vvi17g367 1245 Gene3D tricorn interacting facor f3 domain 292 407 IPR042097 -
Vvi17g367 1245 Gene3D tricorn interacting facor f3 domain 23 119 IPR042097 -
Vvi17g367 1245 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 309 408 IPR042097 -
Vvi17g367 1245 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 421 557 - -
Vvi17g367 1245 MobiDBLite consensus disorder prediction 826 849 - -
Vvi17g367 1245 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 15 86 IPR042097 -
Vvi17g367 1245 SUPERFAMILY ARM repeat 885 1187 IPR016024 -
Vvi17g367 1245 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 19 1219 IPR037813 GO:0005669
Vvi17g367 1245 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g367 1245 Gene3D Neutral Protease Domain 2 613 739 IPR027268 -
Vvi17g367 1245 MobiDBLite consensus disorder prediction 830 844 - -
Vvi17g367 1245 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 651 738 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g367 K03128 TAF2; transcription initiation factor TFIID subunit 2 - vvi:100266355 1217.6
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g367 . . . . . . . . Cmo13g01082 . . . . . . Cpe20g00107 . . . . . . . . . . . . . . . Cone2ag0646 . . . Lsi02g00164 Csa01g00648 Chy12g01454 Cme12g01894 . . . Bda14g00912 . Bpe15g00546 Bma03g00887 . . . . Cma13g01041 . Car13g00873 . . . Bhi08g01209 . . Lac10g0216 . . . Cla04g01110 Cam04g1162 Cec01g1673 Cco01g1719 Clacu04g1190 Cmu04g1170 Cre01g1467 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010321 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32