Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g37 ATGGCAGCCTTTTCGTATCAACACCCACCTTTTCTTCTTGACTCAGTTTTCTTGCCGAGTACTCCCATTAAGATGTCTGGTTTTATGGAGGAAGGGAACACCACCACTTGTTTCTCTCAGTTTTTCCCTTCTGAATCTCTTCATGAGGTTCCTGCTGATGCTAGGGTTCATGAAAGTACGTCTCTTCAACACAGCTCAAAGGTCACTCTCAGTGACAATGAGCCTTGTGTGACCCAGAAACTGAGCACAGACTCTTCGTCAGTGGTGGATAGGCTTGAACTTGGTGAACAGGTCACCCAGAAGGTGGCTCCCATAGAGAGGGAGAGGAAGAGGAAGAGCAGAGATGGGTCTTCCTTGACTTCTGCTCAATCGAAGGATGCAAGAGAAGGGAAAGGAAAGAAGGCAAAGAAAGGCAGTGGTCTGGTGAAGGATGGAGAAGAGGAGCAGCTCAAAGCAGACAAGAAGGATCAGAAGAAAGCCTCTGAAGAGCCTCCAACCGGCTACATTCATGTAAGAGCAAGGAGGGGCCAAGCAACAGACAGCCACAGCCTTGCAGAGAGGGTAAGAAGAGAGAAAATCAGTGAGAGGATGAAGCTCTTGCAAGCACTTGTTCCTGGTTGTGACAAGGTTACTGGAAAGGCCCTTATGTTGGATGAAATAATCAACTATGTCCAGTCCCTACAGAATCAAGTAGAGTTCCTCTCTATGAAGCTTGCTTCTGTGAATCCTATGTTCTATGACTTTGGCATGGACCTAGATGCACTCATGGTGAGGCCAGAGAGATTGAGTGCCTTGACATCACCACTGCCATCTCTGCAACAATGCAGTCCTTCCCAGCCCACAGCTTATGCTGATACAACCACCACCTTCACTGCAACAAATAACTATCCTGTTATGGACACTTCAGCTTCAATTTTATTTCACCAGGGGCAAAGGCTAAATGTCTTCTCACAGGATAATGGTAGTCTATTGTGGGATGTGGATGATCAAAGACAGAAGTTCATTAATCCATCTGGACTCATCAGCAACAACTTGTGTTCTTTCAATTAA 1050 46.19 MAAFSYQHPPFLLDSVFLPSTPIKMSGFMEEGNTTTCFSQFFPSESLHEVPADARVHESTSLQHSSKVTLSDNEPCVTQKLSTDSSSVVDRLELGEQVTQKVAPIERERKRKSRDGSSLTSAQSKDAREGKGKKAKKGSGLVKDGEEEQLKADKKDQKKASEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKLLQALVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDFGMDLDALMVRPERLSALTSPLPSLQQCSPSQPTAYADTTTTFTATNNYPVMDTSASILFHQGQRLNVFSQDNGSLLWDVDDQRQKFINPSGLISNNLCSFN* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 299664 302297 + Vvi17g37 Vvi17g37 778734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g37 349 Gene3D - 174 246 IPR036638 GO:0046983
Vvi17g37 349 CDD bHLH_AtBPE_like 167 251 - -
Vvi17g37 349 SMART finulus 183 233 IPR011598 GO:0046983
Vvi17g37 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Vvi17g37 349 Coils Coil 143 163 - -
Vvi17g37 349 MobiDBLite consensus disorder prediction 100 166 - -
Vvi17g37 349 MobiDBLite consensus disorder prediction 126 166 - -
Vvi17g37 349 MobiDBLite consensus disorder prediction 58 74 - -
Vvi17g37 349 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983
Vvi17g37 349 MobiDBLite consensus disorder prediction 53 74 - -
Vvi17g37 349 MobiDBLite consensus disorder prediction 102 116 - -
Vvi17g37 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 244 IPR036638 GO:0046983
Vvi17g37 349 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 349 IPR024097 GO:0006355
Vvi17g37 349 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 349 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14192 PF00010 HLH 5.70E-06 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g37 - - vvi:100268131 637.491