Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g37 | ATGGCAGCCTTTTCGTATCAACACCCACCTTTTCTTCTTGACTCAGTTTTCTTGCCGAGTACTCCCATTAAGATGTCTGGTTTTATGGAGGAAGGGAACACCACCACTTGTTTCTCTCAGTTTTTCCCTTCTGAATCTCTTCATGAGGTTCCTGCTGATGCTAGGGTTCATGAAAGTACGTCTCTTCAACACAGCTCAAAGGTCACTCTCAGTGACAATGAGCCTTGTGTGACCCAGAAACTGAGCACAGACTCTTCGTCAGTGGTGGATAGGCTTGAACTTGGTGAACAGGTCACCCAGAAGGTGGCTCCCATAGAGAGGGAGAGGAAGAGGAAGAGCAGAGATGGGTCTTCCTTGACTTCTGCTCAATCGAAGGATGCAAGAGAAGGGAAAGGAAAGAAGGCAAAGAAAGGCAGTGGTCTGGTGAAGGATGGAGAAGAGGAGCAGCTCAAAGCAGACAAGAAGGATCAGAAGAAAGCCTCTGAAGAGCCTCCAACCGGCTACATTCATGTAAGAGCAAGGAGGGGCCAAGCAACAGACAGCCACAGCCTTGCAGAGAGGGTAAGAAGAGAGAAAATCAGTGAGAGGATGAAGCTCTTGCAAGCACTTGTTCCTGGTTGTGACAAGGTTACTGGAAAGGCCCTTATGTTGGATGAAATAATCAACTATGTCCAGTCCCTACAGAATCAAGTAGAGTTCCTCTCTATGAAGCTTGCTTCTGTGAATCCTATGTTCTATGACTTTGGCATGGACCTAGATGCACTCATGGTGAGGCCAGAGAGATTGAGTGCCTTGACATCACCACTGCCATCTCTGCAACAATGCAGTCCTTCCCAGCCCACAGCTTATGCTGATACAACCACCACCTTCACTGCAACAAATAACTATCCTGTTATGGACACTTCAGCTTCAATTTTATTTCACCAGGGGCAAAGGCTAAATGTCTTCTCACAGGATAATGGTAGTCTATTGTGGGATGTGGATGATCAAAGACAGAAGTTCATTAATCCATCTGGACTCATCAGCAACAACTTGTGTTCTTTCAATTAA | 1050 | 46.19 | MAAFSYQHPPFLLDSVFLPSTPIKMSGFMEEGNTTTCFSQFFPSESLHEVPADARVHESTSLQHSSKVTLSDNEPCVTQKLSTDSSSVVDRLELGEQVTQKVAPIERERKRKSRDGSSLTSAQSKDAREGKGKKAKKGSGLVKDGEEEQLKADKKDQKKASEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKLLQALVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDFGMDLDALMVRPERLSALTSPLPSLQQCSPSQPTAYADTTTTFTATNNYPVMDTSASILFHQGQRLNVFSQDNGSLLWDVDDQRQKFINPSGLISNNLCSFN* | 350 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 299664 | 302297 | + | Vvi17g37 | Vvi17g37 | 778734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g37 | 349 | Gene3D | - | 174 | 246 | IPR036638 | GO:0046983 | |
Vvi17g37 | 349 | CDD | bHLH_AtBPE_like | 167 | 251 | - | - | |
Vvi17g37 | 349 | SMART | finulus | 183 | 233 | IPR011598 | GO:0046983 | |
Vvi17g37 | 349 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 177 | 227 | IPR011598 | GO:0046983 | |
Vvi17g37 | 349 | Coils | Coil | 143 | 163 | - | - | |
Vvi17g37 | 349 | MobiDBLite | consensus disorder prediction | 100 | 166 | - | - | |
Vvi17g37 | 349 | MobiDBLite | consensus disorder prediction | 126 | 166 | - | - | |
Vvi17g37 | 349 | MobiDBLite | consensus disorder prediction | 58 | 74 | - | - | |
Vvi17g37 | 349 | Pfam | Helix-loop-helix DNA-binding domain | 181 | 228 | IPR011598 | GO:0046983 | |
Vvi17g37 | 349 | MobiDBLite | consensus disorder prediction | 53 | 74 | - | - | |
Vvi17g37 | 349 | MobiDBLite | consensus disorder prediction | 102 | 116 | - | - | |
Vvi17g37 | 349 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 175 | 244 | IPR036638 | GO:0046983 | |
Vvi17g37 | 349 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 349 | IPR024097 | GO:0006355 | |
Vvi17g37 | 349 | PANTHER | BASIC HELIX LOOP HELIX PROTEIN BHLH8 | 1 | 349 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14192 | PF00010 | HLH | 5.70E-06 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g37 | - | - | vvi:100268131 | 637.491 |