Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g372 ATGGACTGGAGTGTAAATAATGCATTTAAAACATATAAAGATGCAGAACCCAAATCAGTAATGGATATGGCTCTCATTCCAAACATTGACCCAAGAGATATTGGATTGGGTTCTTCAGAAAAGGGCAATGTTGGTCCTGCAGCAAAACCAAGAAAGAAGACAATGACATCAGTTTATCTCAAGTTTTTTGAGACAGCTCCTGATGGGAAAAGTCGTAGGTGTAAATTTTGTGGACAGAGCTATTCTATTGCAACTGCCACTGGCAATTTGGGAAGGCACCTGAGCAACCGCCACCCAGGATACGATAAGTCCGGGGATGCTGTCACCAGTTCGGCCCCACAGCCTATCACAATAGTCAAGAAACCTCAAACTCAAGTGAAATCACCACAAGTGGATTTCGATCATTTGAACTGGTTGCTAATAAAGTGGCTCATTTTGGCCTCACTCCCTCCTTCAACCTTGGAGGAAAAGTGGCTTGCAAACTCCTTTAAATTTCTCAATCCGTCAATTCAACTCTGGCCAGGTGAAAAGTATAAAGCCGTATTCCGTGAAGTTTTCAGAAGCATGAGAGAAGATGTAAGGGCATCTTTGGAACAGGTTTCATCAAAAGTATCGATCACAGTTGATTTCTGGACATCCTATGAACAGATTTTTTATATGAGTGTTACATGTCATTGGATTGATGAAAACTGGTGCTTTCAAAAGGTTCTTCTTGATATTTGTCACATACCTTACCCTTGTGGAAGCAATGAGATCTATCACTCACTGATAAAGGTTCTCAAGATGTACAATATTGAAAGCAAAGTCCTATCCTGCACCCATGATAACAGTCAGACTGCCATGCATGCATGCCATTCCTTAAAAGAGGATTTGGATGGTCAGAAAGTGGGACCCTTCTGCTACCTCCCTTGTGCTGCTCGCACTTTGAACATGATCATAGATGATGGATTAAGAACCACAAAGCCAGTAATCACTAAGATCCGGGAGTTTGTACTGGAGATGAACTCATCCTCAGAGATTTCTGAGGATTTTATTCAATTCACAACTGTTTATCAAGAAGGCAGTTGGAAGATTCCGCTTGATGCTTCAGCCCGGTGGAGCGGCAATTACCAGATGCTTGACATTGTGTGCAAGGCTGGCAAGTCCATGGATGCTGTCATCAGGAAGTATGAGGAGACCCTAAGCGGTAGGATGTTGCTCAACCCTGCAGAGAAGAATGCAGTTAACATTGTGTATGCGTATTTGGAAGCCTTCTACAAAATCACACTCAACATGATAAACAAGGTGCCAACAATTGGTCTGGTTCTTTTCTTCATGGATCACATTTCCGAAATGATTGCTGGTTGCAGAGAATCCCTTCGTAGTCCAGACTGGCTAAAGAATGCTGCTGAAGAAATGGCCAAAAAGACTCGCAGCTACAGCAATCAGGTATGCAATATATTTACATACATGACAGCAATTCTTGATCCCCGAATCAAAGCTGAGCTCATTCCAGAGAGCCTCAACTCGGAAACCAATCTAGAGGAAGCAAGAACCCATTTCATGAGAAATTATTCAACAAACCATTTCCCATCCATTGCCAGTGGATATAGTGCTCAAGAGATTGAGGATGGGGCGAGTGTTTCTTTTGCTGAGGAAATTGCTAGAAAGAAACGAAGGGTGAGCATGAGCACCGCCACTGACGAGCTCACCCAGTACCTGTCAGAGCCACCTGCTCCAATACCAACAGATGTTTTGGAGTGGTGGAAGGTGAACACTACACGTTATCCACGGCTATCTACAATGGCCCGTGATTTCTTGGCTGTTCAGGCAACTTCTGTGGCACCTGAAGAAGTGTTTTGTGGCAAAGGAGATGAGATGGATAAACAACGGTTCTCAATGCCACATGATAGCACACAAGCTCTCCTATGTATTAGGTCATGGACGCATGGTGGAATCAAATTGAAGTATAAATCAACCGAGATAGACTATGAAAGCCTGATGGAATTAGCGACGGCTGCAGCAGATAATGGCACTGCAGGCTTCGACAAGAAACAAAAATGA 2043 43.37 MDWSVNNAFKTYKDAEPKSVMDMALIPNIDPRDIGLGSSEKGNVGPAAKPRKKTMTSVYLKFFETAPDGKSRRCKFCGQSYSIATATGNLGRHLSNRHPGYDKSGDAVTSSAPQPITIVKKPQTQVKSPQVDFDHLNWLLIKWLILASLPPSTLEEKWLANSFKFLNPSIQLWPGEKYKAVFREVFRSMREDVRASLEQVSSKVSITVDFWTSYEQIFYMSVTCHWIDENWCFQKVLLDICHIPYPCGSNEIYHSLIKVLKMYNIESKVLSCTHDNSQTAMHACHSLKEDLDGQKVGPFCYLPCAARTLNMIIDDGLRTTKPVITKIREFVLEMNSSSEISEDFIQFTTVYQEGSWKIPLDASARWSGNYQMLDIVCKAGKSMDAVIRKYEETLSGRMLLNPAEKNAVNIVYAYLEAFYKITLNMINKVPTIGLVLFFMDHISEMIAGCRESLRSPDWLKNAAEEMAKKTRSYSNQVCNIFTYMTAILDPRIKAELIPESLNSETNLEEARTHFMRNYSTNHFPSIASGYSAQEIEDGASVSFAEEIARKKRRVSMSTATDELTQYLSEPPAPIPTDVLEWWKVNTTRYPRLSTMARDFLAVQATSVAPEEVFCGKGDEMDKQRFSMPHDSTQALLCIRSWTHGGIKLKYKSTEIDYESLMELATAAADNGTAGFDKKQK* 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4493689 4501284 - Vvi17g372 Vvi17g372 779069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g372 680 SMART bed5 54 101 - -
Vvi17g372 680 SUPERFAMILY Ribonuclease H-like 190 642 IPR012337 -
Vvi17g372 680 Pfam hAT family C-terminal dimerisation region 562 641 IPR008906 GO:0046983
Vvi17g372 680 PANTHER BED ZINC FINGER AND HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 32 651 - -
Vvi17g372 680 Pfam BED zinc finger 57 99 IPR003656 GO:0003677
Vvi17g372 680 PANTHER BED FINGER-RELATED 32 651 IPR045259 -
Vvi17g372 680 Pfam Domain of unknown function (DUF4413) 427 505 IPR025525 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g372 - - - vvi:104882334 1384.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0001 Cone19ag0002 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007314 0 3 0 0 0 1 2 1 1 1 1 1 1 1 1 4 1 2 2 1 1 1 1 1 1 1 1 2 3 1 37