Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g376 ATGGCCTCCATCTCCAAAGCTTCTCTCCTCATATTCCTCTTCTTCTCTCTCCATTTCTTCCCTGTCATCTCCGTCGAGTTCCTAGTCGGTGATGACGACGGCTGGGCTCTTCCATCATCAAAGAGTGGAGAGCAAATGTACAATGAATGGGCATCCCATAACCGGTTCAAAGTCGGCGACACCGTTCATTTTAAGTATGAGAAGGATTCAGTAATGGTAGTGACGGAAGCTGAGTACAACAAGTGCCATTCCGCCCATCCCATTCTTTTCTCCAACAATGGCGATACCATCTTCTCACTGGATCGTCCTGGTTTGTTTTACTTCATCAGTGGGGTTGCAGGGCACTGCGAGCGAGGGCAGAAGATGATCATCAAGGTTTTGGAGCCGCCGAGCCCGCCTTCGGTCCCCAAACAGAATGGGACGTCAAATTCGTCGAATTCGTCTCATAGCAGTGGTGCAGTTGACATGGCTGCTGCCATTTCTGCTTCAACAGTTGGGCTGTTCATCATCTCTTTCTTTGGGGTTCTTCTGTTCTAA 537 49.16 MASISKASLLIFLFFSLHFFPVISVEFLVGDDDGWALPSSKSGEQMYNEWASHNRFKVGDTVHFKYEKDSVMVVTEAEYNKCHSAHPILFSNNGDTIFSLDRPGLFYFISGVAGHCERGQKMIIKVLEPPSPPSVPKQNGTSNSSNSSHSSGAVDMAAAISASTVGLFIISFFGVLLF* 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4521709 4522460 + Vvi17g376 Vvi17g376 779073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g376 178 Gene3D - 24 130 IPR008972 -
Vvi17g376 178 ProSiteProfiles Phytocyanin domain profile. 25 128 IPR003245 GO:0009055
Vvi17g376 178 PANTHER NTEPC 5 143 - -
Vvi17g376 178 SUPERFAMILY Cupredoxins 24 127 IPR008972 -
Vvi17g376 178 Pfam Plastocyanin-like domain 44 120 IPR003245 GO:0009055
Vvi17g376 178 MobiDBLite consensus disorder prediction 128 148 - -
Vvi17g376 178 PANTHER BLUE COPPER PROTEIN 5 143 IPR039391 GO:0009055
Vvi17g376 178 CDD OsENODL1_like 26 127 IPR041846 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g376 - - vvi:100264540 330.487