Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g378 ATGAGTACCGAGGCGTTCTCGGCTTTGGGTTTGTCTGAGCCCACCATGAAGGCGATTAATGACATGGGCTTCGGGAACATGACTCAGATTCAAGCCCGAGCAATCCCACCACTTTTGTTGGGAAAAGATGTTCTTGGAGCTGCAAGGACAGGTTCTGGAAAGACCCTTGCATTTTTAATACCAGCAGTGGAGTTGTTATATCACATTAGTTTTATGCCACGGAATGGGACAGGTGTTGTTGTGATTTGCCCTACAAGGGAGCTTGCTATTCAGACTCATGCAGTGGCAAAGGACCTTCTCAAGTATCATACACAGACTCTTGGCTTGGTAATCGGTGGCTCAGCTAGAAGGGGAGAAGCAGAACGCCTTGCAAAAGGTGCAAATCTATTAGTAGCAACTCCTGGCCGACTTCTTGACCACCTTCAAAATACCAAGGGATTCATATATAAAAACTTGAAGTGCCTCATTATTGATGAGGCTGACAGGATATTGGAAGCGAACTTCGAGGAAGAAATGAAGCAAATTATTAAGCTTCTACCAAAGGAGAGGCAAACTGCTCTTTTCTCAGCCACCCAGACTAAGAAGGTTGAGGATCTTGCACGCTTATCATTCCAGACAACACCTGTCTATATTGATGTGGATGATGGGAGGACAAAGGTCACTAATGAAGGGCTGCAGCAAGGGTATTGTGTTGTGCCAAGTGCCAAGAGATTCGTTCTTTTGTATTCCTTCTTGAAGAGGAATCTGTCAAAGAAAGTGATGGTTTTCTTCTCTTCATGTAACTCGGTGAAGTACCATTCAGAACTTCTCAGATACATTCAGGTGGATTGCCTTGATATTCATGGGAAGCAAAAGCAGCAGAAGCGGACATCCACCTTCTTTGACTTCTGTAAAGCCGAGAAAGGCATCTTGTTATGTACTGATGTTGCTGCTCGTGGTCTTGACATTCCCGATGTGGACTGGATAGTGCAGTATGACCCTCCAGATGAGCCCAAGGAATACATCCATAGAGTTGGTCGAACAGCTCGTGGGGAGGGTAAAAAGGGAAATGCCCTGCTTTTTCTGATTCCAGAAGAGTTGCAATTTCTTCGCTATCTTAAGGCTGCAAAGGTACCTGTTAAAGAGTATGAATATGATGTAAAGAAACTGGCTAATGTGCAATCTCACCTGGAAAAGTTGGTGAGCAACAACTATTATTTGAACAAGTCTGCTAAAGATGCATATAGATCTTATATATTGGCATATAATTCACATTCTATGAAGGATATCTTCAATGTTCACCGCCTTGATCTTCAGGCGGTTGCTAGTTCATTCTGCTTTTCTTCGCCGCCAAAGGTAAATCTAAGCATAGACAGCAGTGCATCTAAGTTTAGAAAGAAGACGCATAAGGTTGAAGGAAGCCGGAATGGATTCAGCGAAAGCAACCCTTATGGAAGGCAAAGAGGTCAAGATGATAAGAGACAATTTGTGAGGTATTAA 1479 43.48 MSTEAFSALGLSEPTMKAINDMGFGNMTQIQARAIPPLLLGKDVLGAARTGSGKTLAFLIPAVELLYHISFMPRNGTGVVVICPTRELAIQTHAVAKDLLKYHTQTLGLVIGGSARRGEAERLAKGANLLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIIKLLPKERQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSFLKRNLSKKVMVFFSSCNSVKYHSELLRYIQVDCLDIHGKQKQQKRTSTFFDFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGKKGNALLFLIPEELQFLRYLKAAKVPVKEYEYDVKKLANVQSHLEKLVSNNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVASSFCFSSPPKVNLSIDSSASKFRKKTHKVEGSRNGFSESNPYGRQRGQDDKRQFVRY* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4528655 4537653 - Vvi17g378 Vvi17g378 779075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g378 492 Gene3D - 1 216 IPR027417 -
Vvi17g378 492 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 210 IPR014001 -
Vvi17g378 492 Pfam Helicase conserved C-terminal domain 240 344 IPR001650 -
Vvi17g378 492 SMART ultradead3 23 228 IPR014001 -
Vvi17g378 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 366 IPR027417 -
Vvi17g378 492 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 156 164 IPR000629 -
Vvi17g378 492 CDD DEADc_DDX18 15 212 IPR044773 GO:0003724|GO:0005524
Vvi17g378 492 PANTHER RNA HELICASE 3 481 - -
Vvi17g378 492 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 3 481 - -
Vvi17g378 492 SMART DUF4217_3 385 448 IPR025313 -
Vvi17g378 492 Gene3D - 221 464 IPR027417 -
Vvi17g378 492 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 237 384 IPR001650 -
Vvi17g378 492 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 4 32 IPR014014 GO:0003724
Vvi17g378 492 CDD SF2_C_DEAD 225 355 - -
Vvi17g378 492 SMART helicmild6 264 345 IPR001650 -
Vvi17g378 492 Pfam DEAD/DEAH box helicase 28 199 IPR011545 GO:0003676|GO:0005524
Vvi17g378 492 MobiDBLite consensus disorder prediction 459 492 - -
Vvi17g378 492 Pfam Domain of unknown function (DUF4217) 386 446 IPR025313 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g378 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - vvi:100242258 977.622
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51