Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g379 ATGCAATCCAACGAACCAGCCACTTCCATGGAGGTTGAAAATGTTTTATCGGAACCAAATCCCACATCTGGGACTTTTCCATCAAAGCCAAAGTTTGAGCCTCTAAAGGCTCATGAGATGTCTGAAGGCCGACTCGCAAAGTCTCAGATCTTCGAGCAAAATGAATCCAATCCGGACCATAGAACCCGACCCGGGAACCGCCAAGATGAGACCCGCATTGGTCTTCCATCAAGAAACCCACACCACGGCCTCAAGGAGAAGATGAAAGCTCTAACACTCTTGTATGAGCAGCAGAAGCAAGCTTCAATGGCGCTCAAGAACCCCTCCTCCAAGCCTCAAGACCAGCGCTTTTCCACTCATCCCAGCGTCGAGCTTCTCAATTCCATAAAAGCCGAAGAAAACAAACCAAAACTAGGCAATGTGATGAAAGAAAACACTTTGCCCAATTCCACAATTACAAGAACTTTCGTCTTGCCACTCCCTCCAGTTGATGACGCCAAGGAAAATGTGATCGCGGGTGTCGATCGCATTGTGGGGTTTTCGTGTCCAAGAAGGGCTCCGGTCTCCAACAATGTGGCTCGGAAGCTGTCGATGGTGGCTTCGGAGCCTAGAGGGATTGGAGGGACAAAGAATGTGCAAGAATTGGAGGCTATTTCGGAGAGACCCGGAATTGGGAGTAGAATTCTTGTTTTTGTGAGGCTTAGGCCTATGGCCAAGAAGGAGAAAGAGGCTGGATCGCGGTGTTGTGTGAGAATCGTAAACCGGCGTGATCTTTATCTTACCGAGTTTGCCACTGAGAATGATTATTTGAGGCTGAAGAGGCTTCGGGGAAGACATTTCGCATTCGACGCTTCCTTCCCGGATTCAGCAACGCAGCAAGAGGTTTATTCCACTACAACTGCAGAGCTAGTGGAAGCAGTATTGCAAGGGAGGAATGGGTCAGTGTTCTGTTATGGTGCCACAGGAGCTGGAAAAACATACACAATGCTGGGTACAGTAGAGAATCCAGGAGTGATGGTTTTGGCAATAAAAGATCTCTTCACCAAGATCAGGCAGAGGAGCTGTGATGGGAATCATGTGGTTCACCTCTCCTATCTTGAGGTCTATAATGAAACTGTCAGGGATTTGCTTGCCCCTGGAAGGCCTCTTGTCCTGAGAGAAGATAAACAGGGGATTGTAGCAGCAGGTCTTACTCAATACAGAGCTTATTCTACAGATGAGGTGATGGCATTGCTTCAACAAGGAAACCTAAACAGAACTACTGAACCAACCCGTGTCAATGAAACTTCTTCACGGTCCCATGCTATTCTGCAGGTTGTGGTTGAATACAAAATTAAAGATGCTTCTATGAATATCATTAATCGGGTGGGGAAGCTGTCACTGATTGATCTTGCTGGGTCTGAAAGAGCTCTTGCAACTGACCAGAGGACGCTTAGATCACTTGAGGGTGCCAACATAAATAGGTCGCTCCTTGCACTGAGCAGCTGCATCAATGCCCTTGTGGAAGGGAAGAAGCACATACCCTACAGGAATTCAAAGCTCACCCAACTCCTCAAGGACTCTTTAGGAGGAGCTTGCAACACTGTGATGATTGCCAATATTAGCCCAAGCAACCTCTCATTTGGAGAAACTCAAAACACCCTTCACTGGGCTGATCGAGCCAAGGAGATCCGGAACAAGGCATGTGACACCAATGAAGAAATACAGCAATTACCTGAATCTGAAGCTGATCAGGCCAAGCTATTACTTGAATTGCAGAAAGAGAACAGAGAATTGCGAGTACAGCTTGCACGTCAGCAACAGAAAGTTCTAACCCTTCAAGCACAGTCCTTGGCTGCAAACTGCTCTCCAACCCCATCTTCAGTTACATCTCTGTTGTCTCCTCCATCTTCTATTCAACCAAATGAAAAACGGAAACCCAGATCCTCCTTCTTAGCTGGAAACTGTTTCACACCAGAATCGAAGAGAAAAGGAGCAGAGGAGACAGTTAGAGAGCTTCAGCGGACTGTGAAGGCATTAGAAGCAGAAATGGAGAGAATGAAAAAGGATCATGTGTTTCAGCTAAAGCAGAAGGATGATTTTATACGCGACCTTTCAAGGAAAAGTGGAAAACCATCAGAGGGAAAACGAAGTTTCTGGGACATAACTACAGCTAACAGCCCTTCAGTGGCCACTTTAAATGGAAGAAAAACAAGAAGCCATGTCATTTCTGAGCCTGCTGCAGCTCCCTCAATGCTTCTTCAGCCGGGTTTTCACTCATCAAAAGCCAACGCTTTGAAGCGGTAA 2286 46.76 MQSNEPATSMEVENVLSEPNPTSGTFPSKPKFEPLKAHEMSEGRLAKSQIFEQNESNPDHRTRPGNRQDETRIGLPSRNPHHGLKEKMKALTLLYEQQKQASMALKNPSSKPQDQRFSTHPSVELLNSIKAEENKPKLGNVMKENTLPNSTITRTFVLPLPPVDDAKENVIAGVDRIVGFSCPRRAPVSNNVARKLSMVASEPRGIGGTKNVQELEAISERPGIGSRILVFVRLRPMAKKEKEAGSRCCVRIVNRRDLYLTEFATENDYLRLKRLRGRHFAFDASFPDSATQQEVYSTTTAELVEAVLQGRNGSVFCYGATGAGKTYTMLGTVENPGVMVLAIKDLFTKIRQRSCDGNHVVHLSYLEVYNETVRDLLAPGRPLVLREDKQGIVAAGLTQYRAYSTDEVMALLQQGNLNRTTEPTRVNETSSRSHAILQVVVEYKIKDASMNIINRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPSNLSFGETQNTLHWADRAKEIRNKACDTNEEIQQLPESEADQAKLLLELQKENRELRVQLARQQQKVLTLQAQSLAANCSPTPSSVTSLLSPPSSIQPNEKRKPRSSFLAGNCFTPESKRKGAEETVRELQRTVKALEAEMERMKKDHVFQLKQKDDFIRDLSRKSGKPSEGKRSFWDITTANSPSVATLNGRKTRSHVISEPAAAPSMLLQPGFHSSKANALKR* 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4537832 4549604 + Vvi17g379 Vvi17g379 779076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g379 761 SMART kinesin_4 225 565 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g379 761 MobiDBLite consensus disorder prediction 740 761 - -
Vvi17g379 761 PANTHER CENTROMERE PROTEIN E 708 753 - -
Vvi17g379 761 PANTHER CENTROMERE PROTEIN E 195 708 - -
Vvi17g379 761 Coils Coil 756 761 - -
Vvi17g379 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 602 IPR027417 -
Vvi17g379 761 Pfam Kinesin motor domain 233 557 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g379 761 MobiDBLite consensus disorder prediction 617 658 - -
Vvi17g379 761 ProSitePatterns Kinesin motor domain signature. 457 468 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi17g379 761 PRINTS Kinesin heavy chain signature 310 331 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g379 761 PRINTS Kinesin heavy chain signature 424 441 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g379 761 PRINTS Kinesin heavy chain signature 458 476 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g379 761 PRINTS Kinesin heavy chain signature 507 528 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g379 761 MobiDBLite consensus disorder prediction 617 638 - -
Vvi17g379 761 MobiDBLite consensus disorder prediction 1 83 - -
Vvi17g379 761 Gene3D Kinesin motor domain 224 563 IPR036961 -
Vvi17g379 761 ProSiteProfiles Kinesin motor domain profile. 227 557 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g379 761 PANTHER KINESIN-LIKE PROTEIN 195 708 - -
Vvi17g379 761 PANTHER KINESIN-LIKE PROTEIN 708 753 - -
Vvi17g379 761 Coils Coil 656 690 - -
Vvi17g379 761 MobiDBLite consensus disorder prediction 54 83 - -
Vvi17g379 761 MobiDBLite consensus disorder prediction 1 27 - -
Vvi17g379 761 Coils Coil 582 609 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g379 K10401 KIF18_19; kinesin family member 18/19 - vvi:100259414 1365.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g379 . . Bda06g00496 . . . . Bma12g00945 . . Cma10g00258 . Car10g00243 . . . . Bhi02g00015 . . . . . . Cla06g01495 Cam06g1649 Cec06g1709 Cco06g1707 Clacu06g1615 Cmu06g1564 Cre06g2376 . . Cone13ag0006 Cone19ag0005 . . . . . Blo15g00357 . . Bpe07g00737 . . Bma08g00253 . Cmo10g00275 . . . . . . Cpe18g00737 . . . . . . . . . . . . . . Lsi06g01359 Csa01g00353 Chy02g02390 Cme02g01775
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007142 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34