Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g38 ATGGCGACTAGGTACTGGGTCGTCTCCCTCCCCGTTCCGACCTCTGCATCGTCTCTATGGAGTCGCCTTCAGGAATCCATCTCCAAACACTCCTTCGACACTCCTCTCTACAGGTTCAATACTCCGGATCTTCGCGTTGGAACTCTCGATTCTCTTCTGTCTCTCAGTGACGATCTTCTGAAGTCGAATAGCTTTGTCGAGGGAGTGACTCACAAGATACGGCGTCAGATCGAGGAGTTGGAGAGGGGTTCGGGCGGTGAGAGTAATGCTTTGACAGTGGATGGGGTTCCTGTTGATTCCTACTTGACGAGGTTCGTGTGGGATGAGGCGAAGTACCCTACAATGTCTCCTCTCAGGGAGATTGTGGATGGCATTCATGTACAAGTAGCTAAGATTGAGGATGATCTTAAGGTTCGTGTTGCTGAGTATAACAATGTACGCAGTCAGCTTAATGCCATAAACAGAAAGCAAACTGGAAGCTTAGCTGTACGTGATCTGTCCAACTTAGTGAAGCCGGAGGATATTATTACTTCAGAACACTTGGTGACGCTCCTTGCTGTTGTTCCTAAGTATTCACAGAAGGATTGGTTATCAACCTATGAAACACTTGCCACCTATGTGGTCCCCAGGTCATCCAAGAAGTTGCACGAGGACAATGAATATGCTCTCTATACTGTAACTATATTTGGTCGTGTTGCTGACAATTTTAAGACTAGCGCACGAGAGAGAGGTTTTCAAATTCGTGATTTTGAATATAGTCCAGAAACACAAGAGAGTAGGAAGCAGGAGTTGGAAAAACTGATGCTAGATCAGGACACGATTAGAACCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGTCTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCAGAGAGCATTCTGAGATATGGATTGCCACCATCTTTCTTATCAGTGGTATTGGCACCTTCTGTTAAAAGCGAAAAGAAAGCACGCTCAATCCTAGAAGGTCTGTCTGACAGTGCTAACAGCACATATTGGAAATCCGAAGATGAACTTGGAGGTATGGGCAGCCTAGGAGGTGATGCTGATTCTCATCCTTACGTCTCCTTCACCATAAATCTGGTCTGA 1128 46.1 MATRYWVVSLPVPTSASSLWSRLQESISKHSFDTPLYRFNTPDLRVGTLDSLLSLSDDLLKSNSFVEGVTHKIRRQIEELERGSGGESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLREIVDGIHVQVAKIEDDLKVRVAEYNNVRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLSTYETLATYVVPRSSKKLHEDNEYALYTVTIFGRVADNFKTSARERGFQIRDFEYSPETQESRKQELEKLMLDQDTIRTSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLSVVLAPSVKSEKKARSILEGLSDSANSTYWKSEDELGGMGSLGGDADSHPYVSFTINLV* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 309493 318858 - Vvi17g38 Vvi17g38 778735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g38 375 SUPERFAMILY Vacuolar ATP synthase subunit C 1 374 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vvi17g38 375 Gene3D - 163 251 - -
Vvi17g38 375 Gene3D Vacuolar atp synthase subunit c; domain 1 7 334 - -
Vvi17g38 375 Gene3D - 41 312 - -
Vvi17g38 375 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 374 - -
Vvi17g38 375 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 374 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vvi17g38 375 CDD V-ATPase_C 5 372 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vvi17g38 375 Pfam V-ATPase subunit C 5 368 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1109 Vvi17g38 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g38 K02148 - vvi:100266332 733.021