Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g381 ATGGAACCTATGGATATAGTCGGGAAGTCCAAAGAGGATGCTTCTCTGCCAAAAGCTACTATGACAAAAATTATCAAGGAGATGTTGCCCCCAGATGTACGTGTTGCAAGAGATGCTCAAGACCTTCTGATTGAATGTTGTGTAGAGTTTATTAATCTCATCTCCTCAGAGTCCAATGACGTCTGTAGCAGAGAAGAAAAAAGAACCATTGCACCTGAGCATGTTCTCAAGGCTTTAGAGGTTCTTGGATTTGGGGAGTACATTGAGGAGGTGTATGCTGCATATGAACAACACAAGCTTGAAACTATGGACACCATAAAAGGTGGGAAGTGGAGCAATGGAGCGGAAATGACCGAGGAAGAAGCATTGGCAGAGCAGCAGAGGATGTTTGCTGAGGCACGCGCAAGAATGAATGGTGGGGCCTCTATCCAAAAACAATCAGAACTTGACCCAAGTTTGGAGAGCTAA 468 44.66 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNDVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDTIKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGASIQKQSELDPSLES* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4554836 4563362 - Vvi17g381 Vvi17g381 779078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g381 155 MobiDBLite consensus disorder prediction 135 155 - -
Vvi17g381 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Vvi17g381 155 SUPERFAMILY Histone-fold 12 140 IPR009072 GO:0046982
Vvi17g381 155 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982
Vvi17g381 155 MobiDBLite consensus disorder prediction 140 155 - -
Vvi17g381 155 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g381 K21751 DR1, NC2-beta; down-regulator of transcription 1 - vvi:100242295 306.605
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g381 . Blo16g00147 . Bda15g00650 Bpe12g00503 . . . . . Cma10g00260 . Car10g00245 . Sed08g0326 . . Bhi02g00018 Tan09g1961 Cmetu02g0654 . . . . Cla06g01497 Cam06g1651 Cec06g1711 Cco06g1709 Clacu06g1617 Cmu06g1566 Cre06g2378 . . Cone13ag0008 Cone19ag0007 . . . . . . . Bda14g00905 . Bpe15g00553 Bma03g00879 . . Cmo10g00278 . . . . . . . . . . . . . . . . . . . . . Lsi06g01361 Csa01g00351 Chy02g02392 Cme02g01777
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g381 . 1 150 CCAAT-DR1 Transcription Factor Family AT5G08190 82.0 2.9e-65 245.0
Vvi17g381 . 1 143 CCAAT-DR1 Transcription Factor Family AT5G23090 87.5 2.0e-66 248.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14193 PF00808 CBFD_NFYB_HMF 1.00E-21 CL0012 Vvi TF