Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g381 ATGGAACCTATGGATATAGTCGGGAAGTCCAAAGAGGATGCTTCTCTGCCAAAAGCTACTATGACAAAAATTATCAAGGAGATGTTGCCCCCAGATGTACGTGTTGCAAGAGATGCTCAAGACCTTCTGATTGAATGTTGTGTAGAGTTTATTAATCTCATCTCCTCAGAGTCCAATGACGTCTGTAGCAGAGAAGAAAAAAGAACCATTGCACCTGAGCATGTTCTCAAGGCTTTAGAGGTTCTTGGATTTGGGGAGTACATTGAGGAGGTGTATGCTGCATATGAACAACACAAGCTTGAAACTATGGACACCATAAAAGGTGGGAAGTGGAGCAATGGAGCGGAAATGACCGAGGAAGAAGCATTGGCAGAGCAGCAGAGGATGTTTGCTGAGGCACGCGCAAGAATGAATGGTGGGGCCTCTATCCAAAAACAATCAGAACTTGACCCAAGTTTGGAGAGCTAA 468 44.66 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNDVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDTIKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGASIQKQSELDPSLES* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4554836 4563362 - Vvi17g381 Vvi17g381 779078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g381 155 MobiDBLite consensus disorder prediction 135 155 - -
Vvi17g381 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Vvi17g381 155 SUPERFAMILY Histone-fold 12 140 IPR009072 GO:0046982
Vvi17g381 155 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982
Vvi17g381 155 MobiDBLite consensus disorder prediction 140 155 - -
Vvi17g381 155 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14193 PF00808 CBFD_NFYB_HMF 1.00E-21 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g381 K21751 - vvi:100242295 306.605