Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g381 | ATGGAACCTATGGATATAGTCGGGAAGTCCAAAGAGGATGCTTCTCTGCCAAAAGCTACTATGACAAAAATTATCAAGGAGATGTTGCCCCCAGATGTACGTGTTGCAAGAGATGCTCAAGACCTTCTGATTGAATGTTGTGTAGAGTTTATTAATCTCATCTCCTCAGAGTCCAATGACGTCTGTAGCAGAGAAGAAAAAAGAACCATTGCACCTGAGCATGTTCTCAAGGCTTTAGAGGTTCTTGGATTTGGGGAGTACATTGAGGAGGTGTATGCTGCATATGAACAACACAAGCTTGAAACTATGGACACCATAAAAGGTGGGAAGTGGAGCAATGGAGCGGAAATGACCGAGGAAGAAGCATTGGCAGAGCAGCAGAGGATGTTTGCTGAGGCACGCGCAAGAATGAATGGTGGGGCCTCTATCCAAAAACAATCAGAACTTGACCCAAGTTTGGAGAGCTAA | 468 | 44.66 | MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNDVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDTIKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGASIQKQSELDPSLES* | 156 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 4554836 | 4563362 | - | Vvi17g381 | Vvi17g381 | 779078 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g381 | 155 | MobiDBLite | consensus disorder prediction | 135 | 155 | - | - | |
Vvi17g381 | 155 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 14 | 79 | IPR003958 | - | |
Vvi17g381 | 155 | SUPERFAMILY | Histone-fold | 12 | 140 | IPR009072 | GO:0046982 | |
Vvi17g381 | 155 | Gene3D | Histone, subunit A | 4 | 145 | IPR009072 | GO:0046982 | |
Vvi17g381 | 155 | MobiDBLite | consensus disorder prediction | 140 | 155 | - | - | |
Vvi17g381 | 155 | PANTHER | PROTEIN DR1 HOMOLOG | 1 | 154 | IPR044255 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14193 | PF00808 | CBFD_NFYB_HMF | 1.00E-21 | CL0012 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g381 | K21751 | - | vvi:100242295 | 306.605 |