Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g382 ATGTTAACTGATGAAAGAATTGTCGCAGTTAAAAAGTCAATGATAGTTGAAGAAAGCCAAATAGAGCACTTCATAAATGAGATTGTGATTCTTTCACAAATCAATCATAGGAATATAGTTGGGCTCTTAGGTTGTTGCTTGGAGACAGAAGTTCCTTCATTAGTTTATGAGTACATTTCCAATGGAACCTTGTTCCAACTTATTCATAGTCAAGATACGGACTTCCCATTTTCATGGGAAATGCAGATCATGGCAGTTGCTTACCTTACATATCGATGCTTAAACTTGAATGGAAGGAAAATGCCTACAATGAAAGAGGTTATCACAGAATTAGAGCATATTAGAGTGTCTCCTCCATCTTTAAAGGTTGACCAAAATTTTGAAGAGAATGCATGCATCGAAATGGAAACATCAGGCCCCCTAGATAACATTAGTGCTGGTTCTGCCATAATGAAAAACCGATATGTATTTACTGGAGCTTCATGGGTAACAGGTGCTTTTAATAAGGTTGCTAAGGCAGCTAAGGAAGTGGACCAGAAGGCAAAAGAGATGGTGGGAAAGTCTGAAGATGAACAGAAAAGAAGAATAGTGGAAGACTTTACCCAGGTTATTCATCAGAATCAGTGGGTGGATGTATCACCTGTTTTATCCAAGTTCCTCAAAAAATTGAGATCGAACACCAATCTTAGAAGACAGAAAACAACACCAGAAAAAAAAAATAGAACAAAAACAAACAGGATTTATGTGGTTCGGATCCAAGATTTGAATTCTACATCCACAAATCAAGATCACCTCCAAAAAGCCACTAAGATTGAACCATTGTTGGCTAAACCTTTATATCATCGTCCCCTTTCTATATCTGGAAAAGCCGAAAGATCAGAGGATATGTCTATCACCTTGTTGCTTCAGTTAATCATCTCCTTACTATGCCTAAAAGAAGCTTCAGCATCTCCATCTTTGGCAAAGCAAGGCTGTGTAGCTCACTGTGGCGATGTTTCCATTCCCTACCCGTTTGGCATCGGGACAGGTTGCTACTTCAACGATTATTTCTCAATCAACTGCAACGATTCTTCTACTCCTCCGAAGCCCTTCTTGAATCACTCTAAACTCAACCTGGAGCTGCTCAATGTATCGCTGGAATACAAAACAGTGATGGTAAACAGTCCCATAACCCCCCTATGTGGAGGTAATGGAACATGGAGAACCACTGATGTCGGTGGAAGGCCCTTCCGTTTCTCCAGGGTTCATAACATATTCATGGTGGTGGGATGTGACACCAACGCTGTCCTCATGACCGATGATCAAGAAGAAATCTTAGCGGGTTGCACATCCAATTGTAATAGCGGTATTACTAGTACTGGTACAGGTTGCTATGGCATCCAGTGTTGCCAAACCACAATTCCGTACAGTAATCAATCCACTCATCTTGGTATGTACCAAGTGAAATATATCAAGACAAGTGGGGATTGCTCATATGCCTTCTTGGGCGTTAGGGACTGGTTCGCCAACAACATCTCCAATCCAGCTATTAGTACCAATTCCGGCTATGCTCCGTTGGTCATGTTCTGGGAGATGGAAACTGGCTCATTAGGACGCTGTTACAGTCTAAATCTTGACTGGCAGTCTGAAACAGCTATCGATAGTTGCAGCTGTGTGAATAGATACGAAGGGAACCCTTATCTTCCCAATGGATGTCAAGTGGTCGAAGCTTGTGCCAACTGCAGCATTCTCGACTGTGGCATGATAGGGGCTGAATATCATTGCTTTCCCAGCAACAGAAGGGCGAAGGAGCTAAAAGCTATGATTTTAGGTCTTGGTATAGGTGGAGGGTCATTGCTTCTACTCGTTGGAAGTTTTGGACTATACAAAGGAGTCAAAAAGAGAAGGGAAATCATTCGCAAACAAAAATTCTTTAAACGAAATGGCGGTCTATTATTACAACAACAGTTATCTTCTATTGAAACTATTGAAAAAACAAAAATTTTCACATTTAAGGAGTTAGAAATGGCAACTGACAACTTCAACAAGAGTCGAATTCTTGGTCAAGGAGGTCAAGGTACAGTTTATAAAGGAATGTTAAATGATGGAAGAATTATAGCAGTTAAAAGATCAAAAATAATATATGAAAGTCAACTGGAGCAATTCATCAATGAGATTATGATTCTTTCTCAAATCAACCATAGAAATATACTTGGGTTGTTAGGATGTTGTTTAGAGACAGAAGTACCTCTATTAGTTTATGAGTTCATCTCCAATGGAACTTTATTTCAACTTATCCATGATCAAAACAATGAGTTCCCATTCTCATGGCATATGCGTTTGCAAATTGCTTCAGAGGCAGCAGGAGCTCTTGCTTACTTGCATTCATCATCTTCCATGCCCATTTATCATAGAGACATCAAGGACTTTTGGTTACTTCGATCCGGAATATTTTCAATCAGATTTCTGGCTAAACCTTTAAATCATCCCTTTTCTATCTCTGGAAAACCCAATAGACCAGAGAATATGGCTGCGGTCACCTTGTTGCTTCAGTTAATAGTCTCCTTACTATGGCTAAACGAAGCTTCAGCAGCTCCATCTTTGGCAAAGCAAGGCTGTGTCGCTTATTGCGGCGATGTTTCCATTCCCTACCCGTTTGGCATCGGGAAAGATTGCTACTTCAATGATTATTTCTCAATCAACTGCAACGATTCTTCTTCTCCTCCGAAGCCCTTCTTGAATCACACTGAACTCAACCTGGAGCTGTTCAACGTATCACTGGAATACAAAACTGTGATGGTAAACAGTCCCATACCTTCCTTATGTGCAGATAACGGAACATGGAAAAGCAATGATTTTGGTGGAAGCCCCTTCCGTTTCTCCAGCGTTCATAACATATTCATGGTGGTGGGATGTGACACCAACGCAGTCCTCGCCACCGGCGATGAAATCTTAGCGGGTTGCACATCCAATTGTGATAATCGTATTGCTAGAACACGTAGACGTTGCTATGGCATAAAGTGTTGCCAAACCACAATTTCATACAATAGTCAATCCACTCACCTTGGTATGTACAATGTGAGTTATGTCAAGACAGGTGAGGGTTGCGCATATGCCTTCATGGGCGGTAGGGACTGGTACGCCAACAACAACTCTGATCCAGCTAATACTACCAATTCCGGCTATGCTCCGTTGGTCATGTTCTGGGAGATGGAAACTACTTCATTGGGAAGCTGTTACCTTCAAGATCTTGACTGGCAGTCCGGAAAAACTATCGAAATTTGCAGCTGTGAGCATAGATACGAAGGGAACCCTTATCTTCCCAATGGATGTCAAGTGGTTGAAGCTTGTGCCAACTGCAGCCTTCTTGACTGTGGCATGATAGGGACTGAATATCATTGCTTTGCCAGCAACAGAATGGCGAAGCAGCTAAAAGCTATGATTCTAGGTCTTAGTATAGGTGGAGGATCATTTCTTCTACTTGTTGGGAGTTTCGGATTGTACAAAGGAGTCAAAAAAAGAAGGGAGTTCATTCGCAAACAAAAATTCTTTAAACGAAATGGCGGTCTATTATTGCAGCAACAACTATCTTCTAGTGAAATTGTTGAAAAAACAAAAATTTTCACATCTAAGGAGTTAGAAAAAGCAACTGACAACTTCAACAAGAGCCGAATTCTTGGACATGGAGGTCAAGGTACAGTTTATAAAGGCATGTTAAATGATGGAAGAATTGTTGCAGTTAAAAGATCAAATTTAGTTGATGAAAGTCAATTAGAGCCATTCATCAATGAGATTATGATTCTTTCTCAAATCAACCATAGAAATATAGTTGGGTTGTTCGGATGTTGTTTGGAGACAGAGGTGCCTCTATTAGTTTATGAGTTCATCTCCAATGGATCCTTACTCCAACTCATCCATGATCAAAACAATGAATTCCCATTCTCATGGAGCATGCGTTTGCAAATTGCAAGTTTGGTGGTACATTTTATTTTATCATTGGAGGAGAATCACCTATATGATATTCTTGATGATCGAGTTAGGAAGGAAGGTGAGAAAGAGAAAATTATGGCAATGGCCAACCTTGCAAAGCGGTGCTTGAACTTGAGTGGCAAGAAAAGGCCTACAATGAAAGAAGTGACGTTTGAATATCTTTTGTTGGTAAAGTACTTCCAAATATCATGGAATAAAAAACCACATTTTCACGTGGTGGTCATACTCTCTAAAATTATGAGCGGCCAGTATTTTTCAAAGAGTAAAGTGGAAAAATGGATGAATGACGAGTGGCAGATGGTGGGCCAATTCCCATGCTCAATTTTTCGAAGGACCGCCCTGGGACTGGAAGGAGTGGCCCTTAAGGTTAAGAAATCAACATTTCTGTTGAAGTCAGCATCGGCAGCTGCTCCATCTTCGGCTAAACCAGGCTGCGAAGATCGCTGCGGAAACTACTCCATCCCCTACCCTTTCGGCGTAGGCAAGGACTGCTACTATAACGAATGGTTCGCCATCAGCTGCAACAGTTCTTCTTCTTTCCCAACACCCCTCTTGAGTCATCCGAGGATCAATCTGGAGGTGCAGCAGATTTCAGTGGAATACCAAACTGTTTCAGTTCAAACTCCCATGCCTGCCTACTGCCAAAACCAGGAGGAGACCAACCGGACGTGGGACAGCATCGACTTGAAAGAAACCCCCTTCTTTTTCTCTGCAGAACGCAATAGTTTGAGGGTGATAGGGTGTGGGAACGCTGTCCTCAAGAACACATTGAACGGAGCGGAAGTGGGAAATTATACTTACTACAATTGCTCCTGTCTGCCTTACGAGGAAGGCAACCCTTATCGACCCCATGCTTTATGCAAGAACTGCGCCGAATGTCGCAAGGAAGCCGATGGCAGTTTCTCTTGCGTGGTTAGAGGTTCAACTTCAACTTCATCCACTTCTCCAAAGCCTTTGATTCTAGGTCTCAGCTTTGGGATAGGAGGATCGGTATTTCTAATTATTGGTTCATGCTGGTTGTATAAATTTATAAAGAAACAAAGGGTTATCAAGCGCAAAGAACATTTCTTTAAACGAAATGGTGGTTTATTGTTGCAACAAGAAATGTCTTCGGATAGGATTGCTGTTGAGAAGACAAAAATTTTCTCTTCAGAAGAATTGGCAATAGCAACGGAAAACTTCAACAAGAATCGAATTCTTGGGCAAGGAGGACAAGGAACTGTATATAAAGGTATGTTAATTGATGGAAAAATCGTGGCTATTAAAAAATCAAAGATAGTTGATGAAGACCAATTGGAGCAATTCATTAATGAGATTATGATTTTATCACAAATAAATCATAGAAATATAATGAAGTTATTGGGTTGTTGCTTAGAAACCGAGGTTCCTCTATTAAAGCCAATTCCTTCAACAAGATCGGAAGAAGAAAGAAGCTTGGTTGCATATTTTACATCGTCACTGGAACAAGGTCGTCTATTCGATATCATTGATAATCGTGTTATGAAGGAGGGAGGAAAAGATGAGATCTTAGCCGTTGCTAACCTTGCAAGTCGATGCTTGCACTTCAAAGGAAAGGAAAGACCCACCATGAAAGAAGTAACAAAGGAGTTAGAACATTTCAGAACATCTTTTCTACCTTTCAGTCATGTACCACAAAATATCCACAAGGGTGAATCCATGGTAACTGAAATGACGGGGCCTTTGGATAGCACTTCTACATCGACAGAATGGTTTCAGCATGACAAGAAATCATCTTCATATGATGTATAG 5739 40.93 MLTDERIVAVKKSMIVEESQIEHFINEIVILSQINHRNIVGLLGCCLETEVPSLVYEYISNGTLFQLIHSQDTDFPFSWEMQIMAVAYLTYRCLNLNGRKMPTMKEVITELEHIRVSPPSLKVDQNFEENACIEMETSGPLDNISAGSAIMKNRYVFTGASWVTGAFNKVAKAAKEVDQKAKEMVGKSEDEQKRRIVEDFTQVIHQNQWVDVSPVLSKFLKKLRSNTNLRRQKTTPEKKNRTKTNRIYVVRIQDLNSTSTNQDHLQKATKIEPLLAKPLYHRPLSISGKAERSEDMSITLLLQLIISLLCLKEASASPSLAKQGCVAHCGDVSIPYPFGIGTGCYFNDYFSINCNDSSTPPKPFLNHSKLNLELLNVSLEYKTVMVNSPITPLCGGNGTWRTTDVGGRPFRFSRVHNIFMVVGCDTNAVLMTDDQEEILAGCTSNCNSGITSTGTGCYGIQCCQTTIPYSNQSTHLGMYQVKYIKTSGDCSYAFLGVRDWFANNISNPAISTNSGYAPLVMFWEMETGSLGRCYSLNLDWQSETAIDSCSCVNRYEGNPYLPNGCQVVEACANCSILDCGMIGAEYHCFPSNRRAKELKAMILGLGIGGGSLLLLVGSFGLYKGVKKRREIIRKQKFFKRNGGLLLQQQLSSIETIEKTKIFTFKELEMATDNFNKSRILGQGGQGTVYKGMLNDGRIIAVKRSKIIYESQLEQFINEIMILSQINHRNILGLLGCCLETEVPLLVYEFISNGTLFQLIHDQNNEFPFSWHMRLQIASEAAGALAYLHSSSSMPIYHRDIKDFWLLRSGIFSIRFLAKPLNHPFSISGKPNRPENMAAVTLLLQLIVSLLWLNEASAAPSLAKQGCVAYCGDVSIPYPFGIGKDCYFNDYFSINCNDSSSPPKPFLNHTELNLELFNVSLEYKTVMVNSPIPSLCADNGTWKSNDFGGSPFRFSSVHNIFMVVGCDTNAVLATGDEILAGCTSNCDNRIARTRRRCYGIKCCQTTISYNSQSTHLGMYNVSYVKTGEGCAYAFMGGRDWYANNNSDPANTTNSGYAPLVMFWEMETTSLGSCYLQDLDWQSGKTIEICSCEHRYEGNPYLPNGCQVVEACANCSLLDCGMIGTEYHCFASNRMAKQLKAMILGLSIGGGSFLLLVGSFGLYKGVKKRREFIRKQKFFKRNGGLLLQQQLSSSEIVEKTKIFTSKELEKATDNFNKSRILGHGGQGTVYKGMLNDGRIVAVKRSNLVDESQLEPFINEIMILSQINHRNIVGLFGCCLETEVPLLVYEFISNGSLLQLIHDQNNEFPFSWSMRLQIASLVVHFILSLEENHLYDILDDRVRKEGEKEKIMAMANLAKRCLNLSGKKRPTMKEVTFEYLLLVKYFQISWNKKPHFHVVVILSKIMSGQYFSKSKVEKWMNDEWQMVGQFPCSIFRRTALGLEGVALKVKKSTFLLKSASAAAPSSAKPGCEDRCGNYSIPYPFGVGKDCYYNEWFAISCNSSSSFPTPLLSHPRINLEVQQISVEYQTVSVQTPMPAYCQNQEETNRTWDSIDLKETPFFFSAERNSLRVIGCGNAVLKNTLNGAEVGNYTYYNCSCLPYEEGNPYRPHALCKNCAECRKEADGSFSCVVRGSTSTSSTSPKPLILGLSFGIGGSVFLIIGSCWLYKFIKKQRVIKRKEHFFKRNGGLLLQQEMSSDRIAVEKTKIFSSEELAIATENFNKNRILGQGGQGTVYKGMLIDGKIVAIKKSKIVDEDQLEQFINEIMILSQINHRNIMKLLGCCLETEVPLLKPIPSTRSEEERSLVAYFTSSLEQGRLFDIIDNRVMKEGGKDEILAVANLASRCLHFKGKERPTMKEVTKELEHFRTSFLPFSHVPQNIHKGESMVTEMTGPLDSTSTSTEWFQHDKKSSSYDV* 1913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4566358 4592434 - Vvi17g382 Vvi17g382 779079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g382 1912 SUPERFAMILY Protein kinase-like (PK-like) 1194 1379 IPR011009 -
Vvi17g382 1912 Pfam Protein tyrosine and serine/threonine kinase 1215 1314 IPR001245 GO:0004672|GO:0006468
Vvi17g382 1912 Pfam Protein tyrosine and serine/threonine kinase 5 84 IPR001245 GO:0004672|GO:0006468
Vvi17g382 1912 SUPERFAMILY Protein kinase-like (PK-like) 652 801 IPR011009 -
Vvi17g382 1912 SUPERFAMILY Protein kinase-like (PK-like) 1695 1784 IPR011009 -
Vvi17g382 1912 Gene3D Phosphorylase Kinase; domain 1 1688 1788 - -
Vvi17g382 1912 Gene3D Phosphorylase Kinase; domain 1 646 749 - -
Vvi17g382 1912 PANTHER - 1450 1599 - -
Vvi17g382 1912 PANTHER - 1789 1883 - -
Vvi17g382 1912 PANTHER - 309 802 - -
Vvi17g382 1912 PANTHER - 1 83 - -
Vvi17g382 1912 PANTHER - 1317 1375 - -
Vvi17g382 1912 PANTHER - 850 1317 - -
Vvi17g382 1912 PANTHER - 82 131 - -
Vvi17g382 1912 PANTHER - 1653 1788 - -
Vvi17g382 1912 ProSiteProfiles Protein kinase domain profile. 674 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g382 1912 Pfam Wall-associated receptor kinase galacturonan-binding 1468 1529 IPR025287 GO:0030247
Vvi17g382 1912 Pfam Wall-associated receptor kinase galacturonan-binding 325 387 IPR025287 GO:0030247
Vvi17g382 1912 Pfam Wall-associated receptor kinase galacturonan-binding 866 928 IPR025287 GO:0030247
Vvi17g382 1912 ProSiteProfiles Protein kinase domain profile. 1213 1527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g382 1912 MobiDBLite consensus disorder prediction 1888 1912 - -
Vvi17g382 1912 Gene3D Transferase(Phosphotransferase) domain 1 1319 1382 - -
Vvi17g382 1912 Gene3D Transferase(Phosphotransferase) domain 1 750 807 - -
Vvi17g382 1912 Gene3D Transferase(Phosphotransferase) domain 1 1 91 - -
Vvi17g382 1912 MobiDBLite consensus disorder prediction 1888 1903 - -
Vvi17g382 1912 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1789 1883 IPR045274 GO:0007166
Vvi17g382 1912 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 83 IPR045274 GO:0007166
Vvi17g382 1912 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 82 131 IPR045274 GO:0007166
Vvi17g382 1912 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 850 1317 IPR045274 GO:0007166
Vvi17g382 1912 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1450 1599 IPR045274 GO:0007166
Vvi17g382 1912 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1653 1788 IPR045274 GO:0007166
Vvi17g382 1912 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1317 1375 IPR045274 GO:0007166
Vvi17g382 1912 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 309 802 IPR045274 GO:0007166
Vvi17g382 1912 SUPERFAMILY Protein kinase-like (PK-like) 3 83 IPR011009 -
Vvi17g382 1912 Pfam Wall-associated kinase 455 551 IPR013695 GO:0004674|GO:0016021
Vvi17g382 1912 Pfam Wall-associated kinase 995 1091 IPR013695 GO:0004674|GO:0016021
Vvi17g382 1912 Gene3D Phosphorylase Kinase; domain 1 1180 1288 - -
Vvi17g382 1912 Pfam Protein kinase domain 1717 1797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g382 1912 Pfam Protein kinase domain 674 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g382 1912 ProSiteProfiles Protein kinase domain profile. 1717 1912 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g382 - - - vvi:100257634 1005.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g382 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001057 5 0 0 5 2 1 0 2 1 0 1 1 2 0 2 2 1 2 0 0 0 2 0 7 6 3 8 1 10 4 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76315 PF00069 Pkinase 5.20E-20 CL0016 Vvi PK