Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g383 ATGGCAAAGCCAGGCTGTGAGCAGGATCATTGCGGAGACATCCTCATTCCGTACCCGTTTGGCATGGGGAAGAGTTGCTATAAGGATGAATGGTTCTCAATCTCTTGTAGTCATTCGTTCGATCCTCCAAAACCCATTCTAAGTAAACTCAATCTGGAGGTGCTGAGTATAGAAATGGACCGCTTCCAGAAAAGTGTGATGGTTAACAGTCCCATATATTCCAACTGTGAAAATGGAGAGGTGGAGGTGACCAGTAGTCCTTGGCAAAGCAGAGATTTGTGGGGAAGCCCATTCCTTTACTCTCTTCATAACGATCTCGTGGGGGTGGGTTGTCACAATGTGCTGCTGAGAGACAGGAATGAGGAAATCATGGCAGGTTGCGCCTCCACTTGCGACAAGAGTATTACTACTAAAGTGTGCAATTATAACTTGGATATACAATTTTACAGTATCAACATTTTTCTGGTTTTAGTTGTTAGAGAATGTGCCAACTGTCGCTGGGGATGTGATGGCCGTTACAATAGCAGCACTTACAAATATGACTTCTATTGCAGCACAAAGAACAAATCAAAAGCTTTAATTCTAGGCTGCAGTATAAGTGGGGGATTATTGTTGCTACTCATTTTCAGTTTTGGGTTATATAAAGTAGTGAGAAAACAATTGGATATTAGAGTCAAAAAGCGATTCTTTAAACGAAATGGTGGGCTGTTGTTGCAACAACAAATTTCTTCTGATAAGATTGCTTTTGAGAAAACAAAAATTTTCACATCTGACGAGTTAGAGAAGGCGACTGACAACTTCAATAAGAATCGAATTCTTGGTCAAGGAGGTCAAGGAACCGTTTATAAAGGTATGTTAAATGATGGAAGAATTGTTGCAGTTAAAAAGTCAAAAATAGTTGATGAAAACCAATTAGAGCACTTCATTAATGAGATTGTGATTCTTTCACAAATCAACCATAGGAATGTGGTTGGGATTTTGGGGTGTTGCTTGGAGACAGAAGTGCCTTTGTTGGTTTATGAGTTTATTTCTAATGGAACCTTATTTCAACTTATCCATGATCAAAATAGTGAGTTTCCACTTTCATGGGAAATGCGTTTACGAATTGCTTTAGAGGTATCGGGTGCACTTTCTTATTTACACTCAGCATGTTCCATACCCATTTATCATAGAGACATTAAGTCTACCAATATACTTTTAGATGATAAATATAAAGCAAAAGTGTCAGATTTTGGAACATCAAGGTCTATTTCCATTGATCAAACTCATTTGACTACTATTGTACAAGGGACTTTTGGCTATTTGGACCCAGAATATTTTCAATCAAGCCAATTTACTGAAAAGAGTGATGTATATAGTTTTGGAGTAGTTCTTGTTGAGCTTTTAACCGGGCAAAAGCCAATTTCATCTACAAGATCACCAGAAGAAAAAAGTTTGGCAACACATTTCATTTTATCCTTACAAGAGTCTCGTCTATTTGATATTCTTGATGCTCGAGTTGTGAAGGAAGGTCGGAAAGAGGACATCATGACATTTGCTAAGCTTGCAGGTCGATGCTTAAATTTGAATGGAAGGAAAAGACCTACGATGAAAGAAGTTACCACAGAAATAGATAACATTAGAGTGTCTGCCCTACATTTGAATGTTGATCAAAATTTCCAAGAAAATGCATGTGTTGTAACTGAAATAACAGAGTTTTTGGATATGGATGATACTTCAACTTCCAGGGGATCATGTTTAGATGACACTAAAGAATCTTCATTTGATATGGACTGCATTTCTTGGACTGTAGGCCAGTGGCTTAAAGATATCAACAGATTGACTAAAGCTGCGTTCGTCCATGTCCATGGAGGTCTTGAAATACTATTCATTTGTATGTTCACGCATAGGACGCTGACAAAGAAGAGAGTAAGAGCATGGCGGTCACAACTGTACTATGCAGCCCGAGAGTTGCTGCTGCTACCATTGCCACAGCAAGACCACGGACAGCCTCAAAAGTCGAACCCTTGCCTTCAATGTGGCTGCGGCGGCCATCGAGGTCATGATACTGCCGGGCTCCATGCACTGGGCGGCGACGAGAGTGGAGGCAGAGGTGACCGCCGTGACGATCTTCACCATCTGCCTGTCCCTTCCGGCTCCGGAGGAGGCAGCTGTGGCGACTGCTATTGCGGCGATGGCAGTTGCCACTCTTACGATAGAAACAGCGGCGTGGAGCTGGGCATTCTGATGCTCGAGTGCTTCCATTCTTTCCTCATTCCTCTTATACATATCATTGATCATCTTCTGTATTCCAAAACACCCAAAATCAGAGAAAAAATGATTATGAAGTTGGGTCTTCTGCTGATCATCTCCTTTCTATGCCTAACAGCTAAAGCATCATCACCACCAGATGAATATATGGTAAAGCCAAATTGTCGGTATCGATGCGGAAACGTTACCATTCCCTTCCCATTTGGGATCGGGGACAGCTGTTATCTGAACGTGTGGTACTCAGTAAACTGCAGCGTTAATATGTCTTCTGGTGCTGAAAAGCCCTTTCTAAACCATACTAAACTCAACCTGGAGCTGCTGAATGTATCACTGGAACACCGAACGGTGGAAGTTAATAGTCCCATAGCTTCCTATGATCAGCGGCAGGGGGAGAGCAACACGTCTCAGCCAAGTATTGATCTGGACAAAAGCCCTTATCCTGCTCAAGGCCGCAATGGCTTCAACTTTTGCCAAACCCCAATTCTATCCACAGATAGCTACTATCGCAATAACTACCTTGTGGGTTTTACCCGAGGCTGTGAAGGAAACAACTACTCTAACTCCACTACCCATGCCTTCTTGGTGGATAGACACTGGTTTTCTCACAACTCCACAAAACCTGAGGATATTACAAGAGTGAAGTATGCTCCGTTATCATTGTTGTGGAAGACAAAAAGTGGGGACAACGCCAGCTCTGACTGTAACCGCATCGCGTACTACAACCCGATGATGGGATTATATGTTCATTATTCTTGCAGCTGCCCATTGCGTCACGAAGGCAACCCTTATCTTCCCAAGGGATGTGATCATGGTATGCACTTCTTTCTTGATCGGCTGTAA 3090 42.2 MAKPGCEQDHCGDILIPYPFGMGKSCYKDEWFSISCSHSFDPPKPILSKLNLEVLSIEMDRFQKSVMVNSPIYSNCENGEVEVTSSPWQSRDLWGSPFLYSLHNDLVGVGCHNVLLRDRNEEIMAGCASTCDKSITTKVCNYNLDIQFYSINIFLVLVVRECANCRWGCDGRYNSSTYKYDFYCSTKNKSKALILGCSISGGLLLLLIFSFGLYKVVRKQLDIRVKKRFFKRNGGLLLQQQISSDKIAFEKTKIFTSDELEKATDNFNKNRILGQGGQGTVYKGMLNDGRIVAVKKSKIVDENQLEHFINEIVILSQINHRNVVGILGCCLETEVPLLVYEFISNGTLFQLIHDQNSEFPLSWEMRLRIALEVSGALSYLHSACSIPIYHRDIKSTNILLDDKYKAKVSDFGTSRSISIDQTHLTTIVQGTFGYLDPEYFQSSQFTEKSDVYSFGVVLVELLTGQKPISSTRSPEEKSLATHFILSLQESRLFDILDARVVKEGRKEDIMTFAKLAGRCLNLNGRKRPTMKEVTTEIDNIRVSALHLNVDQNFQENACVVTEITEFLDMDDTSTSRGSCLDDTKESSFDMDCISWTVGQWLKDINRLTKAAFVHVHGGLEILFICMFTHRTLTKKRVRAWRSQLYYAARELLLLPLPQQDHGQPQKSNPCLQCGCGGHRGHDTAGLHALGGDESGGRGDRRDDLHHLPVPSGSGGGSCGDCYCGDGSCHSYDRNSGVELGILMLECFHSFLIPLIHIIDHLLYSKTPKIREKMIMKLGLLLIISFLCLTAKASSPPDEYMVKPNCRYRCGNVTIPFPFGIGDSCYLNVWYSVNCSVNMSSGAEKPFLNHTKLNLELLNVSLEHRTVEVNSPIASYDQRQGESNTSQPSIDLDKSPYPAQGRNGFNFCQTPILSTDSYYRNNYLVGFTRGCEGNNYSNSTTHAFLVDRHWFSHNSTKPEDITRVKYAPLSLLWKTKSGDNASSDCNRIAYYNPMMGLYVHYSCSCPLRHEGNPYLPKGCDHGMHFFLDRL* 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4601341 4613394 - Vvi17g383 Vvi17g383 779080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g383 1029 PANTHER - 196 556 - -
Vvi17g383 1029 PANTHER - 797 914 - -
Vvi17g383 1029 PANTHER - 4 146 - -
Vvi17g383 1029 SMART serkin_6 267 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g383 1029 SUPERFAMILY Protein kinase-like (PK-like) 248 534 IPR011009 -
Vvi17g383 1029 Pfam Wall-associated receptor kinase galacturonan-binding 6 61 IPR025287 GO:0030247
Vvi17g383 1029 Pfam Wall-associated receptor kinase galacturonan-binding 805 869 IPR025287 GO:0030247
Vvi17g383 1029 Gene3D Transferase(Phosphotransferase) domain 1 343 562 - -
Vvi17g383 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Vvi17g383 1029 Pfam Protein kinase domain 267 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g383 1029 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 4 146 IPR045274 GO:0007166
Vvi17g383 1029 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 797 914 IPR045274 GO:0007166
Vvi17g383 1029 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 196 556 IPR045274 GO:0007166
Vvi17g383 1029 ProSiteProfiles Protein kinase domain profile. 267 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g383 1029 MobiDBLite consensus disorder prediction 872 892 - -
Vvi17g383 1029 MobiDBLite consensus disorder prediction 693 707 - -
Vvi17g383 1029 MobiDBLite consensus disorder prediction 686 708 - -
Vvi17g383 1029 MobiDBLite consensus disorder prediction 872 894 - -
Vvi17g383 1029 CDD STKc_IRAK 273 540 - -
Vvi17g383 1029 Gene3D Phosphorylase Kinase; domain 1 234 342 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76316 PF00069 Pkinase 5.60E-51 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g383 - - vvi:100250718 831.632