Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g385 ATGCGTCTACAAATTGCGATTGAGGTAGCTGGGGCACTTGCTTATTTACACTCAGCGTGTTCTATACCAATTTATCATAGAGACATCAAGTCTACAAATATACTTTTAGATGATAAACATAGAGCAAAAGTGTCAGATTTTGGAACATCAAGGTCTATTTCTATAGAGCAAACTCACTTGACTACTCTTGTACATGGGACTTTTGGTTACTTGGATCCAGAATATTTTCAATCAAGTCAATTTACTGAAAAAAGTGATGTATATAGTTTTGGAGTTGTTCTTGTTGAACTTTTAACAGGACAAAAGCCAATTTGTTCAACAAGATCACAAGAAGAGAAAAGTTTGGCAACACATTTTATTTTGTCATTACAAGAGTCTCGTCTATTTGATATTCTTGATGCTGGGGTTGTAAAGGAAGGAGAGAAAGAAGAGATCATGGCTCTTGCTTACCTTGCATATCAATGCTTAAACTTGAGTGGAAGGAAAAGGCCTACAATGAAAGAGATTACCATGGAATTAGAGCATATTAGAATGTCTCTTCCACCTTTGAAGGTTGAGCAAAATTTTGAAGAGAATGCATGCATCGAAATGGAAATAATAGGCCCTCTAGATAGTACTTCATCTTTTAGAAGGTCATGTTTGAATTACCCCAAAGCATCTTCCTCAGATGAGCAACCATTGTTATTTAACGCATTATGA 699 35.62 MRLQIAIEVAGALAYLHSACSIPIYHRDIKSTNILLDDKHRAKVSDFGTSRSISIEQTHLTTLVHGTFGYLDPEYFQSSQFTEKSDVYSFGVVLVELLTGQKPICSTRSQEEKSLATHFILSLQESRLFDILDAGVVKEGEKEEIMALAYLAYQCLNLSGRKRPTMKEITMELEHIRMSLPPLKVEQNFEENACIEMEIIGPLDSTSSFRRSCLNYPKASSSDEQPLLFNAL* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4650026 4650725 - Vvi17g385 Vvi17g385 779082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g385 232 Pfam Protein kinase domain 5 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g385 232 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g385 232 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g385 232 Gene3D Transferase(Phosphotransferase) domain 1 1 196 - -
Vvi17g385 232 ProSitePatterns Serine/Threonine protein kinases active-site signature. 24 36 IPR008271 GO:0004672|GO:0006468
Vvi17g385 232 SUPERFAMILY Protein kinase-like (PK-like) 2 176 IPR011009 -
Vvi17g385 232 PANTHER - 1 193 - -
Vvi17g385 232 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 193 IPR045274 GO:0007166
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76317 PF00069 Pkinase 1.10E-29 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g385 - - vvi:100259516 457.988