Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g386 ATGGACGCCGACGAAGAAGATTACGTGTTCTACGGCACGCCGATTGAGCGTGAGGAAGAGATGACCAGTCGTAAGAAGAAAGCTGTTGCTGAGTCTTCTGGTCTCTTGCGAAGCCTCCCTCCCTGGAAGCAAGAGGTTACAGATGAAGAAGGCCGAAGGCGGTTTCATGGAGCATTTACGGGAGGGTTTTCTGCTGGTTTCTACAATACTGTGGGCTCTAAAGAGGGTTGGGCTCCCCAGTCATTTACATCATCACGGAAGAACCGGGCTGAAGTTAAAAAACAGAGTATTTTTAGTTTCTTAGATGATGATGAGATAGCGGAAATGGAAGGCCATTCCCTGGGGACATCTTTGCAGTTTGATACATTTGGATTCACAGCTGCAGAACTTGCTCGAAAACAAGCTGAGAAGGAACAACAGCAAAGGCCATCAGCTATTCCTGGACCTCTTCCTGACGAAATAGTTCTTCTGGCAACAGAATCTATTGGTGTCAAATTGCTGCTGAAGATGGGATGGCGACGTGGTAACTCAATCAAAGATTCACATACTAATTCACTGTATGATGCTCGTCGAGAAGCTAGAAAAGCTTTTCTAGCACTTTCTTCTGATGATGTGAGCACAGACCTTGCTGTCTCTGAGGGTGTTAAGAGTGACCTTCAAAATGCCATTGAGCTGCCTGCGAATGATGATCTTAAGTCTTCTGAAAGTACCCCAGTTTATGTACTCAATCCAAAGCAGGACTTGCATGGTTTAGGTTATGATCCTTTCAAGCATGCTCCAGAGTTTAGGGAAAAGAAGAGACTACGCATGTCTGGGAAAAAAGAGCTGGGGTTGAAAAATGATCTCTTTGCTTTCAAGTCAAGAAAGGTTGCTCCTGGTTTTGGTATTGGAGCACTTGAAGAACTTGATGTTGAAGATGAGGATGTCTATGCTTCTGGTTATGACTTTGAAGATAATTATATTCAAGAAGTTGAAGAGCCTTCAGGTTTGGTCATTGAAAGTAAGCAAAAGTTGGGAAGCAAGGAAAAGGGTGTTCTCTCTGGTTTTAAAGTTGCATCAAAGCTTGACTATCAGTTGGAGAGATTCGATCCTCCAGTTGTTCCAAAGAATTTTGTACCCCACCACAAATTTCATGCTCCTCTCGATGACAGTAACAAGCATGATGGTGATCCCCCTCCCCCAGAGGCTATTGCTCCTGAGGATAATAATCTGAAACTCTTGATTGAGGGGGTTGCAACTTTGGTAGCTAGGTGTGGTAAATTATTTGAGGATCTCTCCAGAGAGAAGAATCAGTCAAACCCATTGTTTTCTTTTCTTACTGGAGGAAATGGCTGTGATTATTATGCAAGAAAGCTGTGGGAGGAGCGACAGAAGCATAATGACAAAAGCAAGCAGCTATTGGATGTGAAATCATCTCCTACCGTGCAGAAGATGACAGCAGAGAGTCGTGGAAAAATTCTAGGAGAAAGGCCTCTAGAAAGAAGCTCCAGAGATACAAACTCATCTGTTGCTTCTGCAGATGTCATTCAACTGCAATTCAATCTGTCAGATACATTTACAAAACCTGCATCACTTAAAGAGTTGTCAGAAATTGCAAAACCTTTCAAAGAGGATCCTGCAAAGCAAGAAAGGTTTGAGCTGTTCCTCAAGGAAAAGTACCATGGAGGGCTTCGCTCTACAGATTCTGGTGGAGCTAGTAATATGTCAGAAGCTGCTCGTGCTCGTGAGAAATTGGATTTTGAGGCAGCAGCTGAGACAATAGAGAAAGGGTTGCGGGGCAAGGAAAGTAATCTTTCTACCCAACAGTTTATGGAGATGTCAGCAACTGCAGTAATGGAGTTTGCTCCTGGAGGACTAGAGCAAGCTAAGGTTACTCAAGCTGAAGAACTGGTAATAAAAAAGATGTATCCAAAACGGGAAGAGTTTCAGTGGCGACCTTCACCTATTTTGTGCAAGCGCTTTGATATCATTGATCCATTTATGGGGAAGCCACCGCCAGCTCCAAGAAGGAGAAGCAAGATGGATTCTCTTGTCTTCACATCAGACTCTGTGAAATCCACAACTGTTGATGAAACTGTTACTTCAAAATTGCCCGTAGCTCAATTAGATCCTCAACAGTTCAGCACAGATGTAAATGCCAGGGAAATTGAAGTCAACATGGAAGTTGAAAAAGTTGAAAGGCCAGTTGACCTGTACAAGGCCATTTTCTCTGATGATTCAGATGATGAAGTAGAGAATTCTACTAGTAATCAGGTGGATGATCCAAAAAGAAAAATTGAAGCAGCTAATACAACACTAAACCGTTTGATGGCTGGCGACTTTTTAGAATCCTTGGGTAAAGAACTAGGCCTGGAGGTTCCCCCTGATATGCCTCAGTCCATAAACAAAGCCAGAACCTCCGCTCCTAAGAAGGAAAGTAATGATGTTAATCCAGGAAATATTAGCTCCCTGGCAGTTGAAAATAAGCCTTCTTCTACCTATACTGCTGTTAAAGCAGAGAAGATGGATCAAGAGGGTAGGAAAGCCAAGACACCCACTGGCCACCGCCAAAATTGGAGCAGTGATTCGTCATCAGAGGATGAAAGGAGTAGAAAACGTTCGAGGCGACGTCGGCATAGAAGTGATAGTTCAGACACTGATATATCGAGCGACCATCAAGATCGTTATCACTCAAGGTCAAAAGGGAGAAAGAAAGGTTCCTCTCGAGAAAAGAGTAGCAGCAGCAGAAGATACTCAAAGCACCATAAACGTGGAAGCAGAGACTCTCCCAGCAGATCTTCTCGTCACAGCAGTGAGAGAGAACGTTCAGAGAGCAAGAGAGAGAAACGGAGATGA 2835 43.7 MDADEEDYVFYGTPIEREEEMTSRKKKAVAESSGLLRSLPPWKQEVTDEEGRRRFHGAFTGGFSAGFYNTVGSKEGWAPQSFTSSRKNRAEVKKQSIFSFLDDDEIAEMEGHSLGTSLQFDTFGFTAAELARKQAEKEQQQRPSAIPGPLPDEIVLLATESIGVKLLLKMGWRRGNSIKDSHTNSLYDARREARKAFLALSSDDVSTDLAVSEGVKSDLQNAIELPANDDLKSSESTPVYVLNPKQDLHGLGYDPFKHAPEFREKKRLRMSGKKELGLKNDLFAFKSRKVAPGFGIGALEELDVEDEDVYASGYDFEDNYIQEVEEPSGLVIESKQKLGSKEKGVLSGFKVASKLDYQLERFDPPVVPKNFVPHHKFHAPLDDSNKHDGDPPPPEAIAPEDNNLKLLIEGVATLVARCGKLFEDLSREKNQSNPLFSFLTGGNGCDYYARKLWEERQKHNDKSKQLLDVKSSPTVQKMTAESRGKILGERPLERSSRDTNSSVASADVIQLQFNLSDTFTKPASLKELSEIAKPFKEDPAKQERFELFLKEKYHGGLRSTDSGGASNMSEAARAREKLDFEAAAETIEKGLRGKESNLSTQQFMEMSATAVMEFAPGGLEQAKVTQAEELVIKKMYPKREEFQWRPSPILCKRFDIIDPFMGKPPPAPRRRSKMDSLVFTSDSVKSTTVDETVTSKLPVAQLDPQQFSTDVNAREIEVNMEVEKVERPVDLYKAIFSDDSDDEVENSTSNQVDDPKRKIEAANTTLNRLMAGDFLESLGKELGLEVPPDMPQSINKARTSAPKKESNDVNPGNISSLAVENKPSSTYTAVKAEKMDQEGRKAKTPTGHRQNWSSDSSSEDERSRKRSRRRRHRSDSSDTDISSDHQDRYHSRSKGRKKGSSREKSSSSRRYSKHHKRGSRDSPSRSSRHSSERERSESKREKRR* 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4682120 4698574 + Vvi17g386 Vvi17g386 779083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g386 944 MobiDBLite consensus disorder prediction 873 890 - -
Vvi17g386 944 MobiDBLite consensus disorder prediction 908 922 - -
Vvi17g386 944 MobiDBLite consensus disorder prediction 377 398 - -
Vvi17g386 944 MobiDBLite consensus disorder prediction 783 944 - -
Vvi17g386 944 MobiDBLite consensus disorder prediction 459 501 - -
Vvi17g386 944 ProSiteProfiles SURP motif repeat profile. 407 449 IPR000061 GO:0003723|GO:0006396
Vvi17g386 944 SMART surpneu2 405 457 IPR000061 GO:0003723|GO:0006396
Vvi17g386 944 MobiDBLite consensus disorder prediction 131 150 - -
Vvi17g386 944 MobiDBLite consensus disorder prediction 923 944 - -
Vvi17g386 944 MobiDBLite consensus disorder prediction 736 758 - -
Vvi17g386 944 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 944 - -
Vvi17g386 944 Pfam Surp module 407 454 IPR000061 GO:0003723|GO:0006396
Vvi17g386 944 Gene3D Surp module 381 462 IPR035967 GO:0003723|GO:0006396
Vvi17g386 944 PANTHER BNACNNG56020D PROTEIN 1 944 - -
Vvi17g386 944 Pfam Protein of unknown function (DUF1604) 39 113 IPR011666 GO:0006397
Vvi17g386 944 MobiDBLite consensus disorder prediction 377 394 - -
Vvi17g386 944 MobiDBLite consensus disorder prediction 793 831 - -
Vvi17g386 944 SUPERFAMILY Surp module (SWAP domain) 390 456 IPR035967 GO:0003723|GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g386 K13123 GPATCH1; G patch domain-containing protein 1 - vvi:100242404 1667.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g386 . . . Bda15g00649 Bpe12g00504 . . . . . . . . . Sed12g2048 . . Bhi02g00020 Tan09g1963 Cmetu02g0079 . . . . Cla06g01499 Cam06g1652 Cec06g1712 Cco06g1710 Clacu06g1618 Cmu06g1567 Cre06g2379 . . Cone13ag0009 Cone19ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00349 . Cme02g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33