Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g387 | ATGGCTGGTGGGAGAAGAAAAAGGCAACACTTCGGTAGAATCCATGCCTTCTCATGTGGGAGAGCATCATTCAATGGTGAACACTCACTGATTGGAGGTCCTGGCTTCTCCAGGATAGTCTTCTGTAATGACCCAGAGTGCTTTGAGGCCGGTCAGCTCAAATATGGAGGCAACTATGTCAGAACTACAAAGTACACACTTGCAACATACTTTCCAAAAGCACTTTTTGAGCAGTTCAGGCGGGTGGCGAACATATATTTCCTCATCTGTGCAATCTTGTCTTTCACCGCCCTCTCACCTTACTCTGCTTTCAGTACTGTTTTTCCTCTTGTTGTTGTGGTGGGAGTGACAATGGGGAAGGAAGCTGTGGAAGATTGGAGGCGAAAAAGGCAGGATATTGAGATGAACAACAGGAAGGTTAAATACCATCGCGGTGATGGTGTTTTTGATTATGCTAAATGGATGGATTTGAAAGTTGGAGATGTAGTGAAAGTGGAAAAGGATGAATTTTTCCCTGCTGATCTCATATTGCTTTCATCAAGTTACGACGATGCGATTTGCTATGTTGAGACTACAAATCTTGATGGAGAAACCAATTTGAAACTAAAACAAGCACTCGATGTAACTGCAAACTTACTTGATGACTCTAGGTTTGAAAATTTCAGGGCAATCATTAAATGTGAAGATCCAAATGCAAATTTGTACTCCTTTCTACGAAACACAGATTATATCTATGGGGTGGTCATCTTCACAGGGCATGACACAAAGGACCTAGAAAATGGAGTGATGACAAGATGGTATCTGAGGCCAGATGATACTACAATTTACTATGATCCAAAAAGAGCTCCAGTTGCAGCAATTTTGCATTTTTTGACTGCCCTTATGCTGTATGGATACTTGATCCCCATTTCCTTGTATGTGTCAATAGAAATTGTGAAAGTTCTCCAGAGTGTTTTCATCAATCAGGATCCGCACATGTACTATGAGGAAGGTGACAAGCCAGCACGAGCACGTACCTCAAATTTGAATGAGGAGCTTGGCCAAGTTGATACTATACTTTCTGATAAAACAGGAACCTTGACTTGCAACTCAATGGAATTTATCAAGTGTTCTATTGCTGGGACTGCTTATGGCCGTGGAATTACAGAGGTTGAAAGGGCTCAGGCTAGGGGGAAAGAGACGCCTTTAGCTCAGGAGAATTTCTTAAGGTTGCTGGCAGTCTGTCATACTGCCATACCTGAAGTGGATGATGAAACAGGGAAAATCTCCTATGAAGCTGAATCACCAGATGAGGCAGCATTTGTTATTGGAGCAAGAGAACTGGGGTTTGAATTTTATGAAAGAACTCAAACGAGCATCTCGCTGCATGAGTTGGATCCTATGTCTGGCAGAAAGGTTGCAAGGACATACAAACTTATGAACATCATAGAATTCAGTAGTGCGAGAAAGCGGATGTCTGTGATTGTAAGAAATGAGGAGGGAAGGCTGCTGCTACTTTCTAAAGGTGCTGACAGTGTCATGTTTGAGAGACTTGCTCAAGATGGAAGAGAGTTTGAAGTACAGACCAGGCTGCACATTAATGAGTATGCTGATGCTGGCTTGAGGACTTTGGTACTTGCATATCGAGAACTTGATGACGAAGAATACAATGAGTTCAACGAGGAATTCTCTCAAGCCAAGAACTTAGTCAGTGCAGATCGTGAGGAGATTATCGAGGAAGTGGCAGAAAGGATTGAGAAAGACTTGATTCTTCTTGGTGCTACTGCTGTTGAAGACAAACTCCAAAATGGGGTTCCTGAGTGCATTGACAAGCTTGCACAAGCTGGAATAAAATTGTGGGTTCTGACTGGAGATAAGATGGAGACTGCAATAAATATTGGGTTTGCCTGTAGTTTGCTTAGACAAGGAATGAAGCAAATAATAATAAATTCCGAAACTCCAGGAATTAAAGCACTGGAGAAAGCAGGGGATAAGTCTGCTGTTGATGAGGCAGCGAAGGCGAATGTCATTCAACAGATAAGTGAGGGTAAGGCACTGCTTAACATAGCAAGTGAAGACTCCGAGGCATTGGCTTTGATCATTGATGGGAAGTCACTCATTTATGCTCTGGAGGACGATGTCAAAGACATGTTTCTAGAGCTAGCCATTGGCTGTGCATCTGTTATATGCTGCCGCTCATCACCTAAACAGAAAGCACTTGTTACAAGGCTGGTTAAAGTAAAAACAGGGAGCACAACATTAGCAATTGGTGATGGGGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGGGTTGGTATCAGTGGGGTTGAAGGAATGCAGGCAGTTATGTCAAGTGACATCGCAATTGCACAGTTCCGGTTTTTGGAGCGCTTGCTACTTGTGCATGGACACTGGTGTTATAGAAGGATCTCGTCTATGATATGCTATTTCTTCTACAAAAACATTGCATTTGGATTTACACTCTTCTTCTTTGAAGCATATGCTTCATTCTCTGGTCAAGCTGCCTACAATGATTGGTACTTGTCGCTCTATAACGTCTTCTTCACATCACTTCCTGTGATTGCCATGGGAGTGTTTGATCAAGACGTTGCTGCGCGCTTTTGTCTCAAGTTCCCTCTGCTATACCAAGAAGGTGTACAGAATGTGCTATTCAGCTGGACCAGAATCCTTGGCTGGGCATTTAATGGGGTTTTGAGCTCCACCTTGATTTTCTTCTTCTGTGCCTGTGCAATGGAGCATCAAGCCTTCCGCAAAGGCGGGGAGATGGCACTCTCCATCAACTATTTCACACTAATTCAGCATGTCTTCATTGAAGCCTGTGCACCAGCTCTATCTTTCTGGCTTGTCACACTCTTTGTAACTGTTGCCACCCTCCTTCCATACTTCAGTTATGCTGCCATTCAAATGAGGTTTTTCCCCATGTATCATCAGATGATTCAATGGATAAGAAATGACGGACACTCTGAGGACCCTGAGTATTGCCAAATGGTAAGGCAGAGATCATTGCGATCCACAACACTCCATGTTGACATTCTCAATTTGGATTTTAAGAAATTTATGTTCTCCTTTTCTTTTCCTCTTCTCAGCAACCAGACAGGGGACCTTCACTGCTAA | 3120 | 42.98 | MAGGRRKRQHFGRIHAFSCGRASFNGEHSLIGGPGFSRIVFCNDPECFEAGQLKYGGNYVRTTKYTLATYFPKALFEQFRRVANIYFLICAILSFTALSPYSAFSTVFPLVVVVGVTMGKEAVEDWRRKRQDIEMNNRKVKYHRGDGVFDYAKWMDLKVGDVVKVEKDEFFPADLILLSSSYDDAICYVETTNLDGETNLKLKQALDVTANLLDDSRFENFRAIIKCEDPNANLYSFLRNTDYIYGVVIFTGHDTKDLENGVMTRWYLRPDDTTIYYDPKRAPVAAILHFLTALMLYGYLIPISLYVSIEIVKVLQSVFINQDPHMYYEEGDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGTAYGRGITEVERAQARGKETPLAQENFLRLLAVCHTAIPEVDDETGKISYEAESPDEAAFVIGARELGFEFYERTQTSISLHELDPMSGRKVARTYKLMNIIEFSSARKRMSVIVRNEEGRLLLLSKGADSVMFERLAQDGREFEVQTRLHINEYADAGLRTLVLAYRELDDEEYNEFNEEFSQAKNLVSADREEIIEEVAERIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIINSETPGIKALEKAGDKSAVDEAAKANVIQQISEGKALLNIASEDSEALALIIDGKSLIYALEDDVKDMFLELAIGCASVICCRSSPKQKALVTRLVKVKTGSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEAYASFSGQAAYNDWYLSLYNVFFTSLPVIAMGVFDQDVAARFCLKFPLLYQEGVQNVLFSWTRILGWAFNGVLSSTLIFFFCACAMEHQAFRKGGEMALSINYFTLIQHVFIEACAPALSFWLVTLFVTVATLLPYFSYAAIQMRFFPMYHQMIQWIRNDGHSEDPEYCQMVRQRSLRSTTLHVDILNLDFKKFMFSFSFPLLSNQTGDLHC* | 1040 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 4702497 | 4708871 | + | Vvi17g387 | Vvi17g387 | 779084 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g387 | 1039 | SFLD | p-type atpase | 337 | 800 | IPR044492 | - | |
Vvi17g387 | 1039 | SUPERFAMILY | Calcium ATPase, transduction domain A | 140 | 256 | IPR008250 | - | |
Vvi17g387 | 1039 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 715 | 832 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi17g387 | 1039 | Gene3D | - | 108 | 258 | - | - | |
Vvi17g387 | 1039 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 52 | 974 | IPR023298 | - | |
Vvi17g387 | 1039 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 258 | 396 | - | - | |
Vvi17g387 | 1039 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 1 | 260 | - | - | |
Vvi17g387 | 1039 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 400 | 1011 | - | - | |
Vvi17g387 | 1039 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 360 | 587 | IPR023299 | GO:0000166 | |
Vvi17g387 | 1039 | Pfam | Phospholipid-translocating ATPase N-terminal | 40 | 107 | IPR032631 | - | |
Vvi17g387 | 1039 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 355 | 361 | IPR018303 | - | |
Vvi17g387 | 1039 | Gene3D | - | 447 | 564 | IPR023299 | GO:0000166 | |
Vvi17g387 | 1039 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 400 | 1011 | - | - | |
Vvi17g387 | 1039 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 1 | 260 | - | - | |
Vvi17g387 | 1039 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 258 | 396 | - | - | |
Vvi17g387 | 1039 | Gene3D | - | 581 | 789 | IPR023214 | - | |
Vvi17g387 | 1039 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 777 | 980 | IPR032630 | - | |
Vvi17g387 | 1039 | CDD | P-type_ATPase_APLT_Dnf-like | 57 | 909 | - | - | |
Vvi17g387 | 1039 | SUPERFAMILY | HAD-like | 348 | 804 | IPR036412 | - | |
Vvi17g387 | 1039 | TIGRFAM | ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase | 391 | 942 | IPR006539 | GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326 | |
Vvi17g387 | 1039 | SFLD | Haloacid Dehalogenase | 337 | 800 | - | - | |
Vvi17g387 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 353 | 367 | - | - | |
Vvi17g387 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 647 | 657 | - | - | |
Vvi17g387 | 1039 | PRINTS | P-type cation-transporting ATPase superfamily signature | 749 | 768 | - | - | |
Vvi17g387 | 1039 | Pfam | Cation transport ATPase (P-type) | 418 | 510 | - | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g387 | K01530 | K14802 | vvi:100247431 | 1871.29 |