Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g387 ATGGCTGGTGGGAGAAGAAAAAGGCAACACTTCGGTAGAATCCATGCCTTCTCATGTGGGAGAGCATCATTCAATGGTGAACACTCACTGATTGGAGGTCCTGGCTTCTCCAGGATAGTCTTCTGTAATGACCCAGAGTGCTTTGAGGCCGGTCAGCTCAAATATGGAGGCAACTATGTCAGAACTACAAAGTACACACTTGCAACATACTTTCCAAAAGCACTTTTTGAGCAGTTCAGGCGGGTGGCGAACATATATTTCCTCATCTGTGCAATCTTGTCTTTCACCGCCCTCTCACCTTACTCTGCTTTCAGTACTGTTTTTCCTCTTGTTGTTGTGGTGGGAGTGACAATGGGGAAGGAAGCTGTGGAAGATTGGAGGCGAAAAAGGCAGGATATTGAGATGAACAACAGGAAGGTTAAATACCATCGCGGTGATGGTGTTTTTGATTATGCTAAATGGATGGATTTGAAAGTTGGAGATGTAGTGAAAGTGGAAAAGGATGAATTTTTCCCTGCTGATCTCATATTGCTTTCATCAAGTTACGACGATGCGATTTGCTATGTTGAGACTACAAATCTTGATGGAGAAACCAATTTGAAACTAAAACAAGCACTCGATGTAACTGCAAACTTACTTGATGACTCTAGGTTTGAAAATTTCAGGGCAATCATTAAATGTGAAGATCCAAATGCAAATTTGTACTCCTTTCTACGAAACACAGATTATATCTATGGGGTGGTCATCTTCACAGGGCATGACACAAAGGACCTAGAAAATGGAGTGATGACAAGATGGTATCTGAGGCCAGATGATACTACAATTTACTATGATCCAAAAAGAGCTCCAGTTGCAGCAATTTTGCATTTTTTGACTGCCCTTATGCTGTATGGATACTTGATCCCCATTTCCTTGTATGTGTCAATAGAAATTGTGAAAGTTCTCCAGAGTGTTTTCATCAATCAGGATCCGCACATGTACTATGAGGAAGGTGACAAGCCAGCACGAGCACGTACCTCAAATTTGAATGAGGAGCTTGGCCAAGTTGATACTATACTTTCTGATAAAACAGGAACCTTGACTTGCAACTCAATGGAATTTATCAAGTGTTCTATTGCTGGGACTGCTTATGGCCGTGGAATTACAGAGGTTGAAAGGGCTCAGGCTAGGGGGAAAGAGACGCCTTTAGCTCAGGAGAATTTCTTAAGGTTGCTGGCAGTCTGTCATACTGCCATACCTGAAGTGGATGATGAAACAGGGAAAATCTCCTATGAAGCTGAATCACCAGATGAGGCAGCATTTGTTATTGGAGCAAGAGAACTGGGGTTTGAATTTTATGAAAGAACTCAAACGAGCATCTCGCTGCATGAGTTGGATCCTATGTCTGGCAGAAAGGTTGCAAGGACATACAAACTTATGAACATCATAGAATTCAGTAGTGCGAGAAAGCGGATGTCTGTGATTGTAAGAAATGAGGAGGGAAGGCTGCTGCTACTTTCTAAAGGTGCTGACAGTGTCATGTTTGAGAGACTTGCTCAAGATGGAAGAGAGTTTGAAGTACAGACCAGGCTGCACATTAATGAGTATGCTGATGCTGGCTTGAGGACTTTGGTACTTGCATATCGAGAACTTGATGACGAAGAATACAATGAGTTCAACGAGGAATTCTCTCAAGCCAAGAACTTAGTCAGTGCAGATCGTGAGGAGATTATCGAGGAAGTGGCAGAAAGGATTGAGAAAGACTTGATTCTTCTTGGTGCTACTGCTGTTGAAGACAAACTCCAAAATGGGGTTCCTGAGTGCATTGACAAGCTTGCACAAGCTGGAATAAAATTGTGGGTTCTGACTGGAGATAAGATGGAGACTGCAATAAATATTGGGTTTGCCTGTAGTTTGCTTAGACAAGGAATGAAGCAAATAATAATAAATTCCGAAACTCCAGGAATTAAAGCACTGGAGAAAGCAGGGGATAAGTCTGCTGTTGATGAGGCAGCGAAGGCGAATGTCATTCAACAGATAAGTGAGGGTAAGGCACTGCTTAACATAGCAAGTGAAGACTCCGAGGCATTGGCTTTGATCATTGATGGGAAGTCACTCATTTATGCTCTGGAGGACGATGTCAAAGACATGTTTCTAGAGCTAGCCATTGGCTGTGCATCTGTTATATGCTGCCGCTCATCACCTAAACAGAAAGCACTTGTTACAAGGCTGGTTAAAGTAAAAACAGGGAGCACAACATTAGCAATTGGTGATGGGGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGGGTTGGTATCAGTGGGGTTGAAGGAATGCAGGCAGTTATGTCAAGTGACATCGCAATTGCACAGTTCCGGTTTTTGGAGCGCTTGCTACTTGTGCATGGACACTGGTGTTATAGAAGGATCTCGTCTATGATATGCTATTTCTTCTACAAAAACATTGCATTTGGATTTACACTCTTCTTCTTTGAAGCATATGCTTCATTCTCTGGTCAAGCTGCCTACAATGATTGGTACTTGTCGCTCTATAACGTCTTCTTCACATCACTTCCTGTGATTGCCATGGGAGTGTTTGATCAAGACGTTGCTGCGCGCTTTTGTCTCAAGTTCCCTCTGCTATACCAAGAAGGTGTACAGAATGTGCTATTCAGCTGGACCAGAATCCTTGGCTGGGCATTTAATGGGGTTTTGAGCTCCACCTTGATTTTCTTCTTCTGTGCCTGTGCAATGGAGCATCAAGCCTTCCGCAAAGGCGGGGAGATGGCACTCTCCATCAACTATTTCACACTAATTCAGCATGTCTTCATTGAAGCCTGTGCACCAGCTCTATCTTTCTGGCTTGTCACACTCTTTGTAACTGTTGCCACCCTCCTTCCATACTTCAGTTATGCTGCCATTCAAATGAGGTTTTTCCCCATGTATCATCAGATGATTCAATGGATAAGAAATGACGGACACTCTGAGGACCCTGAGTATTGCCAAATGGTAAGGCAGAGATCATTGCGATCCACAACACTCCATGTTGACATTCTCAATTTGGATTTTAAGAAATTTATGTTCTCCTTTTCTTTTCCTCTTCTCAGCAACCAGACAGGGGACCTTCACTGCTAA 3120 42.98 MAGGRRKRQHFGRIHAFSCGRASFNGEHSLIGGPGFSRIVFCNDPECFEAGQLKYGGNYVRTTKYTLATYFPKALFEQFRRVANIYFLICAILSFTALSPYSAFSTVFPLVVVVGVTMGKEAVEDWRRKRQDIEMNNRKVKYHRGDGVFDYAKWMDLKVGDVVKVEKDEFFPADLILLSSSYDDAICYVETTNLDGETNLKLKQALDVTANLLDDSRFENFRAIIKCEDPNANLYSFLRNTDYIYGVVIFTGHDTKDLENGVMTRWYLRPDDTTIYYDPKRAPVAAILHFLTALMLYGYLIPISLYVSIEIVKVLQSVFINQDPHMYYEEGDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGTAYGRGITEVERAQARGKETPLAQENFLRLLAVCHTAIPEVDDETGKISYEAESPDEAAFVIGARELGFEFYERTQTSISLHELDPMSGRKVARTYKLMNIIEFSSARKRMSVIVRNEEGRLLLLSKGADSVMFERLAQDGREFEVQTRLHINEYADAGLRTLVLAYRELDDEEYNEFNEEFSQAKNLVSADREEIIEEVAERIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIINSETPGIKALEKAGDKSAVDEAAKANVIQQISEGKALLNIASEDSEALALIIDGKSLIYALEDDVKDMFLELAIGCASVICCRSSPKQKALVTRLVKVKTGSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEAYASFSGQAAYNDWYLSLYNVFFTSLPVIAMGVFDQDVAARFCLKFPLLYQEGVQNVLFSWTRILGWAFNGVLSSTLIFFFCACAMEHQAFRKGGEMALSINYFTLIQHVFIEACAPALSFWLVTLFVTVATLLPYFSYAAIQMRFFPMYHQMIQWIRNDGHSEDPEYCQMVRQRSLRSTTLHVDILNLDFKKFMFSFSFPLLSNQTGDLHC* 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4702497 4708871 + Vvi17g387 Vvi17g387 779084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g387 1039 SFLD p-type atpase 337 800 IPR044492 -
Vvi17g387 1039 SUPERFAMILY Calcium ATPase, transduction domain A 140 256 IPR008250 -
Vvi17g387 1039 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 715 832 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi17g387 1039 Gene3D - 108 258 - -
Vvi17g387 1039 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 974 IPR023298 -
Vvi17g387 1039 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 258 396 - -
Vvi17g387 1039 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 260 - -
Vvi17g387 1039 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 400 1011 - -
Vvi17g387 1039 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 360 587 IPR023299 GO:0000166
Vvi17g387 1039 Pfam Phospholipid-translocating ATPase N-terminal 40 107 IPR032631 -
Vvi17g387 1039 ProSitePatterns E1-E2 ATPases phosphorylation site. 355 361 IPR018303 -
Vvi17g387 1039 Gene3D - 447 564 IPR023299 GO:0000166
Vvi17g387 1039 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 400 1011 - -
Vvi17g387 1039 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 260 - -
Vvi17g387 1039 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 258 396 - -
Vvi17g387 1039 Gene3D - 581 789 IPR023214 -
Vvi17g387 1039 Pfam Phospholipid-translocating P-type ATPase C-terminal 777 980 IPR032630 -
Vvi17g387 1039 CDD P-type_ATPase_APLT_Dnf-like 57 909 - -
Vvi17g387 1039 SUPERFAMILY HAD-like 348 804 IPR036412 -
Vvi17g387 1039 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 391 942 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Vvi17g387 1039 SFLD Haloacid Dehalogenase 337 800 - -
Vvi17g387 1039 PRINTS P-type cation-transporting ATPase superfamily signature 353 367 - -
Vvi17g387 1039 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Vvi17g387 1039 PRINTS P-type cation-transporting ATPase superfamily signature 749 768 - -
Vvi17g387 1039 Pfam Cation transport ATPase (P-type) 418 510 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g219 Vvi17g387 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g387 K01530 K14802 vvi:100247431 1871.29