Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g389 ATGGCTGAGTTCGTTGTCTCCTTTGCCGTGGGCAAAATTGCTGGCCAACTTGTTGAGGAAGCTGGCTCCTTGTCAAACGTACGTGACAGAGTTGAATGGATTGAAGTAGAATTAAGGCGAATGCAATGCTTCCTTAAAGATGCAGAGGCAAAACAGGATGGTGATCAAAGAGTTAAAAACTGGGTGGCTGACATAAGAGATGTTGCCTATGATATTGATGATGTTATCGACACCTTCCTCTGCAAAACGGCACAGCAAAGGAAGGAGGGATTCTTCAGGCTTTCTGGGAGATACGCTTTTGTGTTGAGTGACCCAGTTGCTCACTGGAAGATCAGCAAGAAGATCAATAGGATCATGGAGAAAATTCATGAAATTACTGATAGCAGGTCAACTTATGGAATTGAAAATATTGGGAGAGGAGGAGGGAGGAGTTTTGCTACTGACAGGCTTCAAGAGAAGAGACGTTCCTCTTCCCATGCTTGTGAGGAGGATGTAGTTGGTCCGTTGCAAGACATAAGAACTCTGGAATCCTGGCTGATTCATGGGGAGACACGGCTCTGTATACTCTCAATTGTTGGCATGGCGGGTTTAGGTAAGACCACTCTTGCTAAGAAACTTTATCACAGTAACGATGTTAAGAAGAACTTTGATTTTTTTCTGCAGAGTGTGCATTGGCAGCTAGCTCAAGATCCAACACAGTGTGCAGAAATTTTAGCATTGAGTTACTCAGACTTACCCTACTACTTGAAATCATGTTTTCTTTACTTTGGTCTCTTCCCTGAAGATTATGAGATTTCTGCTAGGAGATTAATCTTGTTGTGGGTTGCAGAGGGGTTTGTGCAACCAAGAGGCCAAGAACCACTAGAAGATGTTGCAGAGGATTACTTAGAAGAACTAGTAGGAAGGAGCATGATTCAAGTTGCAACAAGGAAATCTAATGGAAGGATCAAAACATGTTTTCGTTCATTGTTATGCTTTGATATCTGTGAACCAAGTTTCCAAGAGTTGAGGAAATTTAAACTTCTGCGAATTCTTGATTTGGAGGGTGTCTACATTTCTAGGCTTCACTCTTCTATAGGAAATCTCATCCATTTGAGGTACTTGGGCCTGAGAGGAACTTGGTTAAAGAAGCTCCCACCATCCATACAGTTTCTTTTAAACTTGCAAACCCTGGATTTGAGATCTACTTTGCTTAATCCCATTCCAATTGTCATTTGGAAGATGCAAAAATTGAGACACCTGTATTTCAATGAGCTAGAAGAGATGGCACTGCACACAAGAGATCTTTTTGATGCCGAGTACTTCCCACAGAATCTTACTGAGCTATCCTTGAAAGGCTCATTCCTGATGGAAGACCCCATGGTAAAGCTGGAGATGCTGCAGAGCCTAAGAGTATTAAAACTGAAACACTCAGCATATCTGGGGAAAGAAATGATTTGCTCCTGTGGGGGTTTCCCTCAGCTCCATTTCTTGAAACTTTCTTTTCTAAATACAGTTGAGAGATGGAGGATAGAAGATGGAGCAATGGGCAGACTCAGACAGTTAGAGATCATTGAGTGCAAACGGTTAAAGATTGTTCCAAGAGGGTTGCAGCCAGTCACTACCATTCACAAATTGAAGCTGGGCTACATGCCTCGTGAATTTGAAATGAAGGTTCAAGAACGCCAGGGGGAGAACTGGTGGCTGTTGGCAGTGGAGATGGCTCTCCAAGCTTCAGCCACTGTTAGACATCCTTTCTCTGCTCCTCCTCCTTCATTATCTCCCACACCTAGAGCTTCTTCTTCCCCCTTTAAACCCCCACCAAAACCCCAGTTAAGACCCATCTCAATATCACTGCCAGCATCCATTACCATCCCTCTATTTTCTCTCTTCACACCTCCCCATGAAGCCAAGGCTGTCTCCATCCCCAAAGATCAGATAGTCTCATCTATCACTGAAGTGGAGAAAAAAATTGATGAAATTCAGGAGGTGGGTTCGGGTTTTCTGGACACTACACAGCGTATTCTGGAAGTTGTGGCAAATGCACTGAAACCCGGTATTGATGCAGCAGGCCCGATCTTAAAACAGGCTGGAGAACAGGCCTCAAAGATCGCTTCTCCAGCTATCTCTGAGGCTTCTAAGACAGCAGAAGAAGCAATTCAAAGCTCAGGACTTGACACAGCCCCTATTCTCAACGCTGCTAAGACGGTAACTGAGGCAGCACAACAGACCACAAAGTTGATTCAAGAGGCAAAGCCTATTGCTTCATCTACTGTTGAAACGATCTCAACAGCAGAACCCACTGTGATAGTGGGAACTGCTGGAGCATTATTTGTCGCATACCTCCTCTTTCCTCCCATCTGGTCTGTCATTTCTTTCAGCCTTCGCGGTTACAAAGGTGAGCTTACCCCTGCCCAAACCCTTGATCTAGTGTCTACAAAAAATTATGTTATGATTGATATTCGATCAGAGAAGGACAAGGAAAAAACTGGCATTCCTCGCTTTCCCTCTGGAGCTAAAAACAGGATCTTTGCAATTCCGTTAGAAGAACTACCCAGCAAGCTGAGAGGCCTTGTCAGAAATTCAAAGAAGGTAGAAGCCGAAATAGTGGCTGTGAAGATTTCATATCTCAAGAAAATAAGTAAAAGCTCCAACATTGTGATCATGGACTCGTACTCTGATTCAGCCAAAATAGTAGCAAGAGTACTCACAAGCCTTGGCTTCAAGGACTGCTGGACTGTGGCTGGGGGGTTCTCTGGAAGCAGGGGGTGGTTGCAGAGTCGTTTAGGAACAGACTATTATAACTTTGCTTTTGCAGAGATTGTGTCACCATCCCGGGTCATCCCTGCAGCATTAAGACGCTTTGGCACAACTGGCTCAAGATCTGGTCAAAAGTTGCTTCCTGGGAGCTCTGATTAA 2898 44.2 MAEFVVSFAVGKIAGQLVEEAGSLSNVRDRVEWIEVELRRMQCFLKDAEAKQDGDQRVKNWVADIRDVAYDIDDVIDTFLCKTAQQRKEGFFRLSGRYAFVLSDPVAHWKISKKINRIMEKIHEITDSRSTYGIENIGRGGGRSFATDRLQEKRRSSSHACEEDVVGPLQDIRTLESWLIHGETRLCILSIVGMAGLGKTTLAKKLYHSNDVKKNFDFFLQSVHWQLAQDPTQCAEILALSYSDLPYYLKSCFLYFGLFPEDYEISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEELVGRSMIQVATRKSNGRIKTCFRSLLCFDICEPSFQELRKFKLLRILDLEGVYISRLHSSIGNLIHLRYLGLRGTWLKKLPPSIQFLLNLQTLDLRSTLLNPIPIVIWKMQKLRHLYFNELEEMALHTRDLFDAEYFPQNLTELSLKGSFLMEDPMVKLEMLQSLRVLKLKHSAYLGKEMICSCGGFPQLHFLKLSFLNTVERWRIEDGAMGRLRQLEIIECKRLKIVPRGLQPVTTIHKLKLGYMPREFEMKVQERQGENWWLLAVEMALQASATVRHPFSAPPPSLSPTPRASSSPFKPPPKPQLRPISISLPASITIPLFSLFTPPHEAKAVSIPKDQIVSSITEVEKKIDEIQEVGSGFLDTTQRILEVVANALKPGIDAAGPILKQAGEQASKIASPAISEASKTAEEAIQSSGLDTAPILNAAKTVTEAAQQTTKLIQEAKPIASSTVETISTAEPTVIVGTAGALFVAYLLFPPIWSVISFSLRGYKGELTPAQTLDLVSTKNYVMIDIRSEKDKEKTGIPRFPSGAKNRIFAIPLEELPSKLRGLVRNSKKVEAEIVAVKISYLKKISKSSNIVIMDSYSDSAKIVARVLTSLGFKDCWTVAGGFSGSRGWLQSRLGTDYYNFAFAEIVSPSRVIPAALRRFGTTGSRSGQKLLPGSSD* 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4726334 4732295 + Vvi17g389 Vvi17g389 779086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g389 965 Gene3D - 152 240 IPR027417 -
Vvi17g389 965 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 567 964 - -
Vvi17g389 965 Gene3D - 793 930 IPR036873 -
Vvi17g389 965 Pfam Rx N-terminal domain 5 90 IPR041118 -
Vvi17g389 965 SUPERFAMILY L domain-like 320 546 - -
Vvi17g389 965 MobiDBLite consensus disorder prediction 579 604 - -
Vvi17g389 965 PRINTS Disease resistance protein signature 188 203 - -
Vvi17g389 965 PRINTS Disease resistance protein signature 458 474 - -
Vvi17g389 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 219 IPR027417 -
Vvi17g389 965 Gene3D - 241 329 IPR036388 -
Vvi17g389 965 CDD RHOD 799 913 - -
Vvi17g389 965 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 771 913 IPR036873 -
Vvi17g389 965 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 567 964 IPR044690 GO:0009704|GO:0071277|GO:0090333
Vvi17g389 965 MobiDBLite consensus disorder prediction 581 604 - -
Vvi17g389 965 Gene3D - 5 128 - -
Vvi17g389 965 CDD RX-CC_like 2 127 IPR038005 -
Vvi17g389 965 Pfam NB-ARC domain 171 221 IPR002182 GO:0043531
Vvi17g389 965 Gene3D Ribonuclease Inhibitor 330 556 IPR032675 -
Vvi17g389 965 ProSiteProfiles Rhodanese domain profile. 805 926 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g389 - - - vri:117904151 1180.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi19g1124 . 59 381 Sulfurtransferasese/Rhodanese AT1G79230 78.6 2.5e-153 538.5
Vvi19g1124 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 74.0 1.7e-115 412.5
Vvi17g389 . 605 884 Sulfurtransferasese/Rhodanese AT5G23060 68.4 2.8e-96 349.0
Vvi15g742 . 1 329 Sulfurtransferasese/Rhodanese AT4G01050 57.9 3.4e-104 375.9
Vvi14g82 . 8 614 Sulfurtransferasese/Rhodanese AT1G09280 66.8 2.5e-236 815.1
Vvi13g182 . 97 446 Sulfurtransferasese/Rhodanese AT2G40760 74.0 5.8e-154 541.2
Vvi17g979 . 11 335 Sulfurtransferasese/Rhodanese AT1G17850 68.5 2.1e-137 486.1
Vvi8g1244 . 1 227 Sulfurtransferasese/Rhodanese AT2G42220 69.9 4.6e-88 321.2
Vvi8g246 . 37 218 Sulfurtransferasese/Rhodanese AT3G08920 67.0 1.2e-71 266.5
Vvi17g860 . 1 287 Sulfurtransferasese/Rhodanese AT4G24750 66.6 1.2e-109 393.3
Vvi6g993 . 17 297 Sulfurtransferasese/Rhodanese AT5G19370 59.6 2.4e-89 325.9
Vvi19g557 . 48 398 Sulfurtransferasese/Rhodanese AT5G55130 73.7 2.2e-153 538.9
Vvi16g997 . 50 228 Sulfurtransferasese/Rhodanese AT4G27700 81.0 1.5e-80 296.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32