Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g398 ATGTTCTATCCTTTGTTCCTTTTTTTCTTCTTGTTTTCTCATGGAAATCTGTCCTTTGGAGACAATTCTAGTAGCCTATTTCGATCCTTTCGAATGCTCCACCTCCCAACCCCCACAATAGGTCCCGAGGCCCTTGCCTTTGATTGCTCTGGTGCTGGCCCGTATGCTAGTGTAGCAGATGGGAGAGTTCTTAAGTGGCAGGCTGAATCTGCTGGTTTTGTGGATTTCACGGTTGCTTCTCCGTCTAGGTCCAAGCAACTGTGTGATGGTTCAAGTGATCCTGCAAAGGAACCCACCTGTGGGAGACCATTAGGAATAGGTTTCAATAACAAAACAGGTGATCTCTACATCGCTGATGCCTACTATGGCCTCTTCGTTGTTGGTCCCGACGGTGGAAGAGCCACCCAACTTGCCACTGAAGCAGAAGGTGTTCCGTTTAGGTTTCTTAATGCTGTAGATGTCGACCAGGAAACTGGCATAGTTTATTTCACAGATGCTAGTGCTCGCTTTCAAAGAAGGGAATTTCAAAACGCTGTTCTAGCAGGAGACATGACTGGGAGGCTAATGAAATATGATCCAAGAACCAAACAAGTCACAGTGTTGTTAAGAGGCCTGGGTCTTGCAGTTGGAGTGGCAATAAACAAAGATGGGTCATTCGTCCTGGTTTCTGAGTTTATTGCCACCAGAATCCAAAGATATTGGCTTAGAGGCCCCAAAGCGAACACCTCAGAACTTTTCCTGAAACCTACAGGCACCCCAGATAACATTAAGAGGAATGCAAGAGGAGAGTTTTGGGTGGCTGCGAATATAGGAGCAGAAATGGCTGCAGCTGCGCCTTTGGGGCTTAGGGTTAGCGAAGAAGGGAAGATTTTGCAGGTGGTGGCCTTTGATACAGGAGATATAACTAGGACCATCAGTGAAGTTCATGAGTATAATGGAGCATTATATGTAGGGGAGTTCATGCTTGCAGTTCAAACTGGAGACATGACAGGAAGACTAATGAAATATGATCCCAGAACTCAAGAAGTCACAGAATTGCTAAGAGGCCTTGGTGGAGCAGGTGGAGTGACAATAAGCAAAGATGGGTCATTCATCCTTGTTACAGAGTTCGTCACTAACAGGATCCAAAGGTTTTGGCTTAAAGGCCGTAAAGCCAATACCTCACAACTTTTTCTGAAACCTCCAGGCACGCCAGATAACATTAAGAGCAATGCAAGAGGAGAGTTTTGGGTAGCTGTGAACATTGGAGCAGGAACGGCAGTTGTGCCTTTGGGGCTTAGACTAAGTGAAGAAGGGAAGGTATTGCAGATGGTGGCTTTTGGGGTCCTTCCTTTTACCTTGTTCAACAAACTCCAATTGCCATCATCCATTACGGGTCCAGAGTCCCTCGCATTCGACTTGAAAGGTGAAGGGCCCTACACCGGTGTTTCCGATGGTAGAGTCCTCAAATATCAGGGGCCTGCTGTTGGTTTCACAGATTTTGCCGTCACTTCACCAAATAGGACCGAGGAAATGTGTGATGGCTCAATTGATCCAGCATTGGAAGCCACCTGTGGGAGGCCATTAGGCTTGGGTTTCAACTATCACACAGGCGATCTCTACATGGTTGATGCTTATTTGGGACTCATGGTGGTGGGTTCCAGTGGAGGGATTGCTACCCAACTTGCTGCTGCTGCAGAAGGCATCCCCTTTCGGTTTCTAGCAGGTCTGGACGTGGACCAAGGAAATGGAATGGTCTATTTTACAGAAGCTAGCACTCGATTCCAGTTAAGGGATATGCAGGAACTAATTGCAAGCAATGACAGTACAGGAAGCCTATTTAGGTATGATCCGCAGAGCAGGGAGGTGAGAGTATTGCTCGGGGGCCTTTCTGTGGCAGTTGGGGTGGCAGTAAGCAGAGATGGTATGTTTGTGCTTGTTGCTGAGTTAACTGCAAACAGAATCCGTAGGTTTTGGCTTGGAGGTCCGAAAGCTAATACTTCAGAAGTTTTCATGGAACTCCTGGGAAAACCAAGTAACATTAAGAGGAACGAAAGGGGAGAGTTCTGGGTGGCAATAAACAATGCATTAGGACCACCGGCACCTCCAGAATCACTTGTGATGCCTCTAGGGCTAAGACTCAGCAATGATGGCAGGGTTTTAGAAGTAGCTCCTCTCGTTGGGGCATATCAAATCAGTGCGATCAGTGAAGTTCAAGAGCTACCGTGGCTCCTCACTACAGATATGGCCATCATCTTCAGCCCATCTACTGAGGTCTTCCTCTCCATTTTCATCCTTTTCTTATGTTTTCCCGCCAAGGTTTGTTCTCTTTCGTCCTTTACCCAACTCCAATTGCCGCCAAATGTTACAGGTCCCGTGTCCCTTGCCTTTGACCTGACTGTTGGAGGACCCTATGCTGGTGTCAATGATGGTAGAATTATCAGATATGGAGGAACTGACGTTGGTTTCACAGATTTTGCCTTCTGTACACCGACCAGGTCCAAGGCAGTGTGTGATGGCACTACAGACCCAGATTCAGGACCCACGTGTGGAAGACCATTAGGTTTGAGTTTCAACAATCTAAGGAACCAGATGTACATTGCCGATGCGTATTCCGGGCTCTTTGTGGCGGGTACTAATGGAAGGCTTGCAACCAAACTTGCAACAAGTGCAGAAGGGGTGCCCTTCTGCTTCCTTAATGGTTTAGACGTTGACCCATTGTCCGGGCTGGTCTATTTTACAGACTTCAGTACTACAATCCAGCTAAGTGGCAACACAACTCAATTTTCCAGCGATGCAACTGGAAGGCTATTAAGATATGACCCAGAGACAAAGAATGTTACCGTGTTGTTGAGAGGCCTCTCTGGAGCGGCGGGGACTGCAGTCAGCAATGATGGAATGTTTGTTCTCGTCTCAGAGTTCAATGCTAACAGAATTCTGAAGTTTTGGCTTAGAGGTCCTAAAGCATCTACAGCAGAAACTTTCGTAAGTTTCCGGGGAAGGCCAGTTAACATTAAGAGGACTGCATCAGGAAATTTTTGGGTGGCAGTGAATGTCCCAAATAATCAATCTCCACCAACCACAATTCTCACAGGACAAAGGATCAGTTACTACGGAACCATATTGGAAACAGTGAGTTTTGATGATCAATATGGTGGATCTACTTTGATCACTGAGGTGCAACAGCATCTTGGGGCATTATATATTGGAGCAAACTCCGCAAATTTTGTTGGTGTCCACATGGCTTAG 3228 46.72 MFYPLFLFFFLFSHGNLSFGDNSSSLFRSFRMLHLPTPTIGPEALAFDCSGAGPYASVADGRVLKWQAESAGFVDFTVASPSRSKQLCDGSSDPAKEPTCGRPLGIGFNNKTGDLYIADAYYGLFVVGPDGGRATQLATEAEGVPFRFLNAVDVDQETGIVYFTDASARFQRREFQNAVLAGDMTGRLMKYDPRTKQVTVLLRGLGLAVGVAINKDGSFVLVSEFIATRIQRYWLRGPKANTSELFLKPTGTPDNIKRNARGEFWVAANIGAEMAAAAPLGLRVSEEGKILQVVAFDTGDITRTISEVHEYNGALYVGEFMLAVQTGDMTGRLMKYDPRTQEVTELLRGLGGAGGVTISKDGSFILVTEFVTNRIQRFWLKGRKANTSQLFLKPPGTPDNIKSNARGEFWVAVNIGAGTAVVPLGLRLSEEGKVLQMVAFGVLPFTLFNKLQLPSSITGPESLAFDLKGEGPYTGVSDGRVLKYQGPAVGFTDFAVTSPNRTEEMCDGSIDPALEATCGRPLGLGFNYHTGDLYMVDAYLGLMVVGSSGGIATQLAAAAEGIPFRFLAGLDVDQGNGMVYFTEASTRFQLRDMQELIASNDSTGSLFRYDPQSREVRVLLGGLSVAVGVAVSRDGMFVLVAELTANRIRRFWLGGPKANTSEVFMELLGKPSNIKRNERGEFWVAINNALGPPAPPESLVMPLGLRLSNDGRVLEVAPLVGAYQISAISEVQELPWLLTTDMAIIFSPSTEVFLSIFILFLCFPAKVCSLSSFTQLQLPPNVTGPVSLAFDLTVGGPYAGVNDGRIIRYGGTDVGFTDFAFCTPTRSKAVCDGTTDPDSGPTCGRPLGLSFNNLRNQMYIADAYSGLFVAGTNGRLATKLATSAEGVPFCFLNGLDVDPLSGLVYFTDFSTTIQLSGNTTQFSSDATGRLLRYDPETKNVTVLLRGLSGAAGTAVSNDGMFVLVSEFNANRILKFWLRGPKASTAETFVSFRGRPVNIKRTASGNFWVAVNVPNNQSPPTTILTGQRISYYGTILETVSFDDQYGGSTLITEVQQHLGALYIGANSANFVGVHMA* 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4806534 4817448 - Vvi17g398 Vvi17g398 779095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g398 1075 PANTHER STRICTOSIDINE SYNTHASE-RELATED 7 318 - -
Vvi17g398 1075 PANTHER STRICTOSIDINE SYNTHASE-RELATED 324 439 - -
Vvi17g398 1075 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 8-LIKE 752 1073 IPR004141 GO:0009058|GO:0016844
Vvi17g398 1075 Pfam Strictosidine synthase 150 237 IPR018119 GO:0009058|GO:0016844
Vvi17g398 1075 Pfam Strictosidine synthase 319 382 IPR018119 GO:0009058|GO:0016844
Vvi17g398 1075 Pfam Strictosidine synthase 893 979 IPR018119 GO:0009058|GO:0016844
Vvi17g398 1075 Pfam Strictosidine synthase 569 655 IPR018119 GO:0009058|GO:0016844
Vvi17g398 1075 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 8-LIKE 446 733 IPR004141 GO:0009058|GO:0016844
Vvi17g398 1075 PANTHER STRICTOSIDINE SYNTHASE-RELATED 752 1073 - -
Vvi17g398 1075 PANTHER STRICTOSIDINE SYNTHASE-RELATED 446 733 - -
Vvi17g398 1075 SUPERFAMILY Calcium-dependent phosphotriesterase 32 321 - -
Vvi17g398 1075 SUPERFAMILY Calcium-dependent phosphotriesterase 451 718 - -
Vvi17g398 1075 SUPERFAMILY Calcium-dependent phosphotriesterase 756 1068 - -
Vvi17g398 1075 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 8-LIKE 7 318 IPR004141 GO:0009058|GO:0016844
Vvi17g398 1075 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 8-LIKE 324 439 IPR004141 GO:0009058|GO:0016844
Vvi17g398 1075 SUPERFAMILY Calcium-dependent phosphotriesterase 279 443 - -
Vvi17g398 1075 Gene3D - 322 442 IPR011042 -
Vvi17g398 1075 Gene3D - 766 1075 IPR011042 -
Vvi17g398 1075 Gene3D - 24 321 IPR011042 -
Vvi17g398 1075 Gene3D - 443 743 IPR011042 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g398 - - K01757 vvi:100243986 665.996
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0017 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016139 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 3 9