Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g399 ATGTCGATCGAGATCTTCGTGAACCCCACAAGTACTGTTGCCATGATCTCCATTTTCTTACTACTCTTCTTCTCTGTTCCTCACACGGTTCTTACCTTATCATTCTTTACCCAGCTTCAATTGCCACCCAATGTCACAGGCCCTGAGGCCCTTGCCTTTGACCGGCTCGGTGGAGGACCCTACACCGGTGTCTCCGATGGTAGAGTTCTTAAATATGGAGGCCCTAGTGCTGGTTTCACAGATTTTGCCTACACTACACCAACTAGGTCCAAGGCAGTCTGTGATGGCACAACCGACCCTAATTCAGGACCTACCTGTGGAAGGCCGTTGGGGGTGGGATTCAATAATCTGACCGGCCAGCTGTATATTGCTGATGCTTATTCTGGACTCCTGGTGGTTGGATCTAATGGAGGGCTTGCAACCCCAGTAGCCACTACTGCAGAAGGGGTACCCTTTCGCTTCCTTAATGGTTTGGACGTCGACCAACTCACTGGAAATGTTTATTTTACAGACGCAAGTTCAGTCTACGAGCTAAGGGACATCACACAGGGAGTTGAGAACAATGATGCATCTGGAAGGTTATTAAAATATGACCCCAGTACCAAGCAAGTAACTGTACTGATAAGAGGGCTTTCTGGGCCAGCTGGGGCTGCAGTTAGTAGAGATGGTTCGTTTGTACTGGTTTCAGAGTTCATCGCTAACAGAACACAGAAGTTTTGGCTGAGAGGTCCAAAGGCTAATACATCAGAGCTTTTCTTCACCTTTCAGGGCAGGCCTGATAACATTAAGACGAGTATTACAGACACTTTCTGGGTGGCAGTGAACATCGGAAAGTCTGTGCCGACCACTGTGCCCACCGGACAACGGATGGACGCCCATGGCAATGTTCTTCAAACAGTGAATTTTGAGGCTGAATACGGCTCTACTATGATCAGTGAAGTACAAGGGCGTGGGGAGATATTCTTGTATGTTGGATCACGCGATGCCAGCTATGTTGGAGTTTATACCCTAAAAGATTATCATTCAAAAGACATCTTAGCTACTAGTATTCTAACAATGTTGGTCATGCTCTCCATTTTTCTTTCCATCTTCCTATCTTTTTATTCCCAGCTGCATCTTTCCAGTGGAGAACATGTTACTTACAAAGCTCAATTCTTAGAGAGGCTCCCTCTCCCAGCAACAGGGCCTGAGTCCATTGCTTTTGATGCTGCAGGTGGAGGCCCCTACACTGGTATCTCCGACGGTAGAATCCTCAAATATGTGAATGGCAGCGTTGGGTTCGTGGAGTTTGCCATCACTTCATCTAACAGTTCCGAGGAATTCTGTGTTGGCAACGGTAGTGTTGCATTGGATTTCACCTGTGGCCGCCCATTCGGTCTGGGGTTCCACTATCAAACTGGTGATCTCTACATCGCTGATGCTTACTATGGGCTTATGGTGGTTGGTCCCAATGGTGGGGTTGCTACCCAACTAGCCAATGCTGCAGATGGCGTTCCTTTTGGGTTCACTAATGCTCTGGACGTCGACACCGAAACTGGAATGGTTTATTTGGTGGATTACAGTTCTCAATTTTCTGTCAACGAATTCAGTGTCTCGCTCCAAGCCCATGACATGACCGGAAGGCTAATGAAATATGACCCAGAAAGCAAGGAGCTGACGGTGCTGTTAGGAGGACTCGGGGGAGCGGCTGGAATGGCAATAAGCAAGGATGGCTCCTTCATTCTCATTACAGAGACCGTCACTAAGAGAATTCGAAAGTTCTGGCTGCAAGGCCCAAAAGCTACTACTTCAGAAATTCTCAAGGAATTCACTGTAAGACCGGCCAACATTAAGAGGAATGAAGAAGGAGAGTTTTGGGTTGCCTTTCTTGTTGCAGATGAAACAGGCAGCTGTCCATCACAGCAGCAATCTCCAGGGCTAAGAATTAGTGGAGATGGCATGATTTTGGAGGCAATCTCCCTTGACACACAGAGTGGTATTAGTGAAGTTGCAGTTTATAATGGAAAAATGTATATAGGGTCTCCCTTCTTGCACTTCGTTGATGTTTATGCATGGGCTTCAGAGTGTCACCGGAGAGAATGA 2082 47.21 MSIEIFVNPTSTVAMISIFLLLFFSVPHTVLTLSFFTQLQLPPNVTGPEALAFDRLGGGPYTGVSDGRVLKYGGPSAGFTDFAYTTPTRSKAVCDGTTDPNSGPTCGRPLGVGFNNLTGQLYIADAYSGLLVVGSNGGLATPVATTAEGVPFRFLNGLDVDQLTGNVYFTDASSVYELRDITQGVENNDASGRLLKYDPSTKQVTVLIRGLSGPAGAAVSRDGSFVLVSEFIANRTQKFWLRGPKANTSELFFTFQGRPDNIKTSITDTFWVAVNIGKSVPTTVPTGQRMDAHGNVLQTVNFEAEYGSTMISEVQGRGEIFLYVGSRDASYVGVYTLKDYHSKDILATSILTMLVMLSIFLSIFLSFYSQLHLSSGEHVTYKAQFLERLPLPATGPESIAFDAAGGGPYTGISDGRILKYVNGSVGFVEFAITSSNSSEEFCVGNGSVALDFTCGRPFGLGFHYQTGDLYIADAYYGLMVVGPNGGVATQLANAADGVPFGFTNALDVDTETGMVYLVDYSSQFSVNEFSVSLQAHDMTGRLMKYDPESKELTVLLGGLGGAAGMAISKDGSFILITETVTKRIRKFWLQGPKATTSEILKEFTVRPANIKRNEEGEFWVAFLVADETGSCPSQQQSPGLRISGDGMILEAISLDTQSGISEVAVYNGKMYIGSPFLHFVDVYAWASECHRRE* 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4820278 4826327 + Vvi17g399 Vvi17g399 779096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g399 693 SUPERFAMILY Calcium-dependent phosphotriesterase 379 678 - -
Vvi17g399 693 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 8-LIKE 14 336 IPR004141 GO:0009058|GO:0016844
Vvi17g399 693 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 8-LIKE 357 684 IPR004141 GO:0009058|GO:0016844
Vvi17g399 693 Pfam Strictosidine synthase-like, N-terminal 36 71 - -
Vvi17g399 693 Pfam Strictosidine synthase-like, N-terminal 386 419 - -
Vvi17g399 693 Pfam Strictosidine synthase 504 591 IPR018119 GO:0009058|GO:0016844
Vvi17g399 693 Pfam Strictosidine synthase 156 243 IPR018119 GO:0009058|GO:0016844
Vvi17g399 693 SUPERFAMILY Calcium-dependent phosphotriesterase 27 335 - -
Vvi17g399 693 Gene3D - 30 348 IPR011042 -
Vvi17g399 693 Gene3D - 380 692 IPR011042 -
Vvi17g399 693 PANTHER STRICTOSIDINE SYNTHASE-RELATED 357 684 - -
Vvi17g399 693 PANTHER STRICTOSIDINE SYNTHASE-RELATED 14 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g399 - - K01757 vvi:100250762 660.988
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g399 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016139 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 3 9