Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g40 ATGGCGGAGTTGCAGCCACCGGAGGGTCAGATCAACGGCGGAGCGGCGGCGGGGGTTTCGTCGGAGAATATTGGGGGGAAGCGACAGAGGAGGCCAAGCGTCCGATTGGGGGATATCGGGGATCAGCCGTACGATTCGCATGTGAATCGGCGGAGCAACAAGCAGTGGAAGCTTCCAATGGAGAGCGATGCCAAGTACAGGAAGGAGTCTGGGAATATAGGTAAGGCCTCAAAGACTCGGCCTTTGATGAATTTGAGCACTGGTGGGGGTGAGTTCAGCGAAGCCCTAGAGGGCGGCGAAGGGGATGAGAAGTTCAGCGGAGGCGAAGACGTGGATGATGGGTTTAGGGATTTCGAAAACGAGGATTCTGATAGCCCATTGAAGGAGCAAAGCCCAATTCATTCTCTGGAGAACATGGCAGTTGACCATGGGAATGACAGGGAGGTCCTTGGGAGGGGGCGGTGTCAGTCCAGAGAAGATGGGGTTAGAGACTGGCTGAATGAATTGGGGTTAGGGCGGTATGCGCCGGTGTTTGAGATCCATGAGGTGGATGAGCAGGTATTGCCAATGTTGACATTGGAAGATCTCAAGGACATGGGAATAAATGCGGTTGGGTCGAGACGTAAAATGTACTGTGCAATTCAGAAGCTAAACAAGGGGTTTTCATGA 669 53.51 MAELQPPEGQINGGAAAGVSSENIGGKRQRRPSVRLGDIGDQPYDSHVNRRSNKQWKLPMESDAKYRKESGNIGKASKTRPLMNLSTGGGEFSEALEGGEGDEKFSGGEDVDDGFRDFENEDSDSPLKEQSPIHSLENMAVDHGNDREVLGRGRCQSREDGVRDWLNELGLGRYAPVFEIHEVDEQVLPMLTLEDLKDMGINAVGSRRKMYCAIQKLNKGFS* 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 333606 334551 + Vvi17g40 Vvi17g40 778737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g40 222 ProSiteProfiles SAM domain profile. 157 220 IPR001660 GO:0005515
Vvi17g40 222 Gene3D - 155 217 IPR013761 -
Vvi17g40 222 PANTHER - 6 93 - -
Vvi17g40 222 PANTHER - 108 222 - -
Vvi17g40 222 CDD SAM_superfamily 162 216 - -
Vvi17g40 222 PANTHER SCP160 6 93 - -
Vvi17g40 222 PANTHER SCP160 108 222 - -
Vvi17g40 222 SUPERFAMILY SAM/Pointed domain 159 218 IPR013761 -
Vvi17g40 222 SMART SAM_4 154 220 IPR001660 GO:0005515
Vvi17g40 222 MobiDBLite consensus disorder prediction 1 134 - -
Vvi17g40 222 Pfam SAM domain (Sterile alpha motif) 159 217 IPR001660 GO:0005515
Vvi17g40 222 MobiDBLite consensus disorder prediction 44 74 - -
Vvi17g40 222 MobiDBLite consensus disorder prediction 97 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g40 - - - vvi:100245808 410.994
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g40 . . Bda06g00712 Bda15g00693 Bpe12g00463 . . . . . Cma10g00030 Cma11g00009 Car10g00021 Car11g00009 . . Cpe04g01637 . . . . . . . Cla06g01774 Cam06g1966 Cec06g2017 Cco06g2024 Clacu06g1924 Cmu06g1865 Cre06g2678 . . Cone13ag0251 Cone19ag0234 . . . . . . . . Bpe07g00905 . . Bma08g00276 . Cmo10g00027 Cmo11g00008 . . . . . Cpe18g00930 . . . . . . . . . . . . . . . . Chy02g02692 Cme02g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007477 3 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 0 1 1 36