Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g402 ATGGGAAGCGACAGCGAAGCAGAGAGGTCAGCGCACAAGGAGAAGGAGAAGAAGAAGTTGTCGGCTTTGGCTCCAATTGCCAAACCCCTCGCTGGCAAAAAGCTTTGCAAGCGTACCCTCAAGCTCATCCGTAGAGCTGCTGAGCACAAATGCTTGAAGAGAGGAGTGAAGGAGGTGGTTAAAGGTATCAGAAGGGGGGACAAGGGATTTTGTGTTATAGCGGGGAATATCACTCCTATTGATGTCATTACTCATGTTCCTATATTATGTGAAGAGGCTGACATACCCTATGTGTATGTTCCCTCAAAAGAAGATCTTGCAAATGCAGGCTCCACTAAGAGGCCAACATGTTGTGTTCTTGTGCTAACCAAGCCCACCAAGGGAGAACTTGGCCAGGAGGAACAAGAAAAATTAAAGGCAGAGTACACCCAGGTTGTATCTGATGTATCTGGGCTGACTTCCACCCTTTTCTGA 474 47.47 MGSDSEAERSAHKEKEKKKLSALAPIAKPLAGKKLCKRTLKLIRRAAEHKCLKRGVKEVVKGIRRGDKGFCVIAGNITPIDVITHVPILCEEADIPYVYVPSKEDLANAGSTKRPTCCVLVLTKPTKGELGQEEQEKLKAEYTQVVSDVSGLTSTLF* 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4885700 4888937 + Vvi17g402 Vvi17g402 779099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g402 157 Gene3D - 17 148 IPR029064 -
Vvi17g402 157 PRINTS Ribosomal protein L7A/RS6 family signature 52 66 IPR018492 -
Vvi17g402 157 PRINTS Ribosomal protein L7A/RS6 family signature 71 84 IPR018492 -
Vvi17g402 157 PRINTS Ribosomal protein L7A/RS6 family signature 87 97 IPR018492 -
Vvi17g402 157 PRINTS Ribosomal protein L7A/RS6 family signature 97 111 IPR018492 -
Vvi17g402 157 SUPERFAMILY L30e-like 19 129 IPR029064 -
Vvi17g402 157 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 40 123 IPR004038 -
Vvi17g402 157 PANTHER - 2 155 - -
Vvi17g402 157 PRINTS High mobility group-like nuclear protein signature 25 38 IPR002415 GO:0003723|GO:0005730
Vvi17g402 157 PRINTS High mobility group-like nuclear protein signature 38 53 IPR002415 GO:0003723|GO:0005730
Vvi17g402 157 PRINTS High mobility group-like nuclear protein signature 55 65 IPR002415 GO:0003723|GO:0005730
Vvi17g402 157 PRINTS High mobility group-like nuclear protein signature 99 111 IPR002415 GO:0003723|GO:0005730
Vvi17g402 157 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g402 K11129 NHP2, NOLA2; H/ACA ribonucleoprotein complex subunit 2 - vvi:100266210 292.352
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g402 Blo04g00807 . . . . . . . . Cmo18g00014 . . . . . . . . . . . . . . . . . . . . . Cone2ag0778 . . Cone19ag0021 Lsi02g00149 Csa01g00634 . . . . . Bda14g00900 . Bpe15g00558 Bma03g00875 . . . . Cma13g01052 Cma18g00013 Car13g00885 . . . . . . . . . . Cla04g01124 Cam04g1178 Cec01g1690 Cco01g1737 Clacu04g1206 Cmu04g1185 Cre01g1483 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010319 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 32