Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g403 ATGGCTCAGGATACATCTTCTGGTGCTGATTCACCTAGGCGGAAGTCTGGTCTATTAAGGGATCAAGTTCAATTGGTCAAAAGGAAGGATTCTACTCGTTACGAGATAGTTCCAATCCAAAATTCTCTGTCATTTGAAAAAGGTTTCTTTATAGTGATACGTGCATGCCAGTTGCTGGCTCAAAACAATGATGGGATAATATTAGTAGGAGTAGCAGGTCCCTCTGGGGCTGGGAAGACTGTGCTTACTGAGAAGGTGCTCAACTTTATGCCCAGCATTGCTGTCATTTCCATGGACAACTACAATGATTCCAGCCGTATCATTGATGGCAACTTTGATGACCCACGCTTGACAGATTATGGCACATTGCTTGAGAATATCCATGGTTTAAAAGCAGGGAAGCCCGTTCAAGTTCCTATTTACGATTTTAAATCTAGCTCTCGCATAGGTTACAGGACAGTTGATGTTCCCAGTTCCCGCATTGTCATTATTGAAGGCATATATGCCTTGAGTGAAAGATTGCGCCCTTTGCTAGATCTTCGAGTATCTGTTACTGGTGGAGTACACTTTGACCTTGTCAAAAGGGTTTTACGGGACATTCAACGTGCTGGCCAAGAGCCTGAAGAAATAATCCATCAAATCTCTGAAACGGTATATCCTATGTACAAGGCTTTTATTGAGCCAGATCTACAAACAGCACATATAAAAATCATCAACAAATTCAATCCATTCACTGGATTTCAGAACCCCACTTATATTTTGAAGTCAACGAGGGATCTTTCAGTGGATCAAATCAAAGCTGTTCTTTCTGAAGAACACACTGAAACTACAGAGGAAACTTATGATATATATCTTCTACCGCCTGGTGAAGATCCTGAAGCATGCCAATCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGGAATGGGTTACAGATAGTCCGTTCATCATTTCACCAAGAATAACTTTTGAAGTTAGTGTCCGCCTTCTTGGTGGCCTGATGGCCTTGGGGTACACAATTGCAGCTATCCTGAAAAGAACCAGCCATTGCTTCTTTGATGATAAAGTGTGTATTAAAACTGATTGGCTAGAACAACTTAATCGTCGGTATGTTCAGGTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGTTTGGATGGTTCATATGTTCCTCGCACATATATAGAACACATTCAGCTGGAGAAGCTTGTGAATGATGTTATGGCGTTACCAGATGATTTGAAGACAAAGCTCAGTATTGATGATGATTTGGCTTCAAGCCCTAAAGAAGCACTATCCCGGGCCTCTGCAGATAGGAGAATGAAATATCTCAACCGTGATATACCACATTCATATTCAACACAAAGGGATAAGAATTTGCCTAAGCTGACCAGACTTGCAGTTAACAGTAGAAGGTTTGATGTAAGAACCCCAGATTCTCCTGCAACAGTTCCAAATCAGGGAGTCATCACTCAGCTCTCAGAACAAATTTCCACACTGAATGAGAGAATGGATGAGTTCACATCTCGCATTGAAGAGTTAAATTCCAAGTTCTCTATCAGGAAAGTTTCTGCTAGCCAACAAAACTTGGCTGTGCAGGCTGATGCCTGCAATGGCTCTGCTCCCACTTCTCTTTTCATGGCTGGCTTAGGAAATGGTTCTTTGACTGGGTCTATACTGCCTAATTCTTCCTCTTCTTCTCAATTGGCTAAAGACTCCCCTCTGATGGATGAGATATTAGTTGTTGTGCGTGGGCAACGTCAGATAATGCATCAATTAGACAATCTGAACAGTCTTCTGCATGAGTACTGGGGAGAGAGGTCACGAGAAGGAAGAACAGATAGGGCAAACAGGATGATTGACATTGAATCCATGGGCATTCCAATTATCTTATCCCTGGCAATTGGTGGTTTAGGTGTCTTCTTTTTCAAAAGTTTGTCTTCCCAAAAGTGA 1986 41.89 MAQDTSSGADSPRRKSGLLRDQVQLVKRKDSTRYEIVPIQNSLSFEKGFFIVIRACQLLAQNNDGIILVGVAGPSGAGKTVLTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYGTLLENIHGLKAGKPVQVPIYDFKSSSRIGYRTVDVPSSRIVIIEGIYALSERLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRDLSVDQIKAVLSEEHTETTEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRTSHCFFDDKVCIKTDWLEQLNRRYVQVQGKDRLYVKNVAEQLGLDGSYVPRTYIEHIQLEKLVNDVMALPDDLKTKLSIDDDLASSPKEALSRASADRRMKYLNRDIPHSYSTQRDKNLPKLTRLAVNSRRFDVRTPDSPATVPNQGVITQLSEQISTLNERMDEFTSRIEELNSKFSIRKVSASQQNLAVQADACNGSAPTSLFMAGLGNGSLTGSILPNSSSSSQLAKDSPLMDEILVVVRGQRQIMHQLDNLNSLLHEYWGERSREGRTDRANRMIDIESMGIPIILSLAIGGLGVFFFKSLSSQK* 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4889730 4906088 - Vvi17g403 Vvi17g403 779100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g403 661 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Vvi17g403 661 PRINTS Uridine kinase signature 66 83 - -
Vvi17g403 661 PRINTS Uridine kinase signature 189 199 - -
Vvi17g403 661 PRINTS Uridine kinase signature 133 148 - -
Vvi17g403 661 PRINTS Uridine kinase signature 225 238 - -
Vvi17g403 661 Coils Coil 501 528 - -
Vvi17g403 661 Pfam CYTH domain 270 405 IPR023577 -
Vvi17g403 661 PANTHER URIDINE KINASE 6 648 - -
Vvi17g403 661 SUPERFAMILY CYTH-like phosphatases 261 408 IPR033469 -
Vvi17g403 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 237 IPR027417 -
Vvi17g403 661 Gene3D - 256 414 - -
Vvi17g403 661 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Vvi17g403 661 CDD UMPK_like 68 240 - -
Vvi17g403 661 Gene3D - 67 246 IPR027417 -
Vvi17g403 661 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 6 648 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g403 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - vvi:100243884 1271.53
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g187 Vvi17g403 ECH
Vvi1g1031 Vvi17g403 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g403 Blo04g00806 . . . . . . . . . Cma10g00269 Cma11g00239 Car10g00252 Car11g00218 . . Cpe04g01432 Bhi02g00041 Tan09g1983 . . . . . . . . . . . . . . . Cone19ag0022 . . . . . . . Bda14g00899 . Bpe15g00559 Bma03g00874 . . Cmo10g00287 Cmo11g00243 . . . . . Cpe18g00728 . . . . . . . . . . . . . . Lsi06g01374 Csa01g00316 . Cme02g01792
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71