Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g407 ATGAGTGGGTGGATGAGCTTCGTCGTGAAGCTTCGAATGCTCATTGCGTTCCCCTGGGAACGCGTTCGCAAGGGCAGTGTTTTTACTATGAAATTGCGCGGCCAGATATCTGATCAGCTGAAGAGCCGTTTCTCTTCAGGATTATCTTTACCTCAAATTTGTGAAAACTTTATAAAAGCAGCATATGATCCTCGCATCTCTGGTATCTATCTCCATATAGAACCTCTAAGTTGCGGGTGGGGTAAAGTTGAAGAAATTCGGCGGCACATATTAGATTTTAAGAAATCAGGTAAATTCATCGTGGCTTATGCCCCTGCATGCGGAGAGAAAGAATATTACCTTGGTTCTGCTTGTGATGAGCTATATGCACCCCCAAGTGCATATTTTTCTTTATATGGTCTGACTGTTCAAGCATCCTTTCTTGGAGGTGTTTTTGAGAAAGTAGGAATTGAACCACAAGTGCAAAGGATTGGTAAATACAAAAGTGCAGGGGATCAACTTACACGCAAAACGATGTCTGAAGAAAACTGTGAGATGTTGACTGCATTACTTGATAATATCTATGGAAATTGGCTGGATAAAATTTCTTCAGCAAAAGGAAAGAAAAGAGAAGATACTGAAAACTTCATCAATGAAGGAGTATATCAAGTAGAAAAGCTAAAAGAAGAGGGCTGGATAACGAATATAAACTATGATGATGAGGTTATTTCTATATTGAAAGAGAGACTGGGACAGCCAAAGGATAAAAATCTTCCAATGGTTGATTACAGTCATGAGAATGTGTATTCTTCCTCAAATCCATCATTGAGAGGTAAAGGATTAAATCCTTTTAAGATAAGAAATAAAGTTTTTCGTCGAAATTTGAATCAAATCAAACCGAAGGAACCCTTAACTATTAGGGGGGGTTAA 909 38.61 MSGWMSFVVKLRMLIAFPWERVRKGSVFTMKLRGQISDQLKSRFSSGLSLPQICENFIKAAYDPRISGIYLHIEPLSCGWGKVEEIRRHILDFKKSGKFIVAYAPACGEKEYYLGSACDELYAPPSAYFSLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKISSAKGKKREDTENFINEGVYQVEKLKEEGWITNINYDDEVISILKERLGQPKDKNLPMVDYSHENVYSSSNPSLRGKGLNPFKIRNKVFRRNLNQIKPKEPLTIRGG* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4959315 4963930 + Vvi17g407 Vvi17g407 779104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g407 302 Gene3D - 26 260 - -
Vvi17g407 302 CDD S49_SppA_67K_type 29 241 - -
Vvi17g407 302 Pfam Peptidase family S49 93 242 IPR002142 GO:0006508|GO:0008233
Vvi17g407 302 SUPERFAMILY ClpP/crotonase 11 229 IPR029045 -
Vvi17g407 302 PANTHER PROTEASE 4 13 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g407 K04773 sppA; protease IV [EC:3.4.21.-] - vvi:100262763 523.087
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g407 . . . Bda15g00647 Bpe12g00506 . . . . . . . . Car11g00213 . . . . . . . . . . Cla06g01515 Cam06g1670 Cec06g1731 . Clacu06g1636 Cmu06g1584 Cre06g2395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010220 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32