Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g408 ATGGGGGTACTTATGACAGAAAGGGCCAATTTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATGAAAGGACTTATTAGCAGATTAATAGATCACTTTGGAATGGCATATACATCACACATCTTGGATCAAGTAAAAACTTTGGGTTTCCAGCAAGCCACTGCTATATCCATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAGGTTTGATTTTGGAAAAACACCATCATTATGGGAATGTACACGCGGTAGAAAAATTACGCCAATCCATGGAGAAATACTCTAAAGTTAGGAAATGGACCCTTGGTTTATCTGGTGGTAAAGACCAAATAGCTGTAATCAGAGCATCTGGAAGTATCAGTCGTGTGCGCAGTCCATTCAGCATACCTGGTTCGGGTATAACTAGTGAGCAATTCATTGAGAAGATTCGTAGTGTGAGAGATTCAAAAAGATATAAGGCTGTTATCATTCGCATTGACAGCCCTGGAGGTGATGCTCTTGCTTCTGATTTAATGTGGAGGGAAATCAGACTTCTGGCTGCCTCAAAACCTGTCATTGCATCAATGTCTGATGTGGCTGCTAGCGGAGGGTACTACATGGCAATGGGAGCAGGGACTATAGTTGCAGAAAATCTTACTTTAACAGGTTCCATTGGAGTTGTTACAGGGAAGTTCAATTTGGGGACACTATATGAAAAAATTGGCTTCAATAAGGAGATTATATCAAGGGGAAGATTTGCTGAGCTCACAGCAGCTGAACAGCGGCCTTTCAGACCAGATGAAGCAGAACTCTTTGCCAAGTCTGCCCAGAATGCATATAAACAATTTCGTGATAAGGCGGCTTTTTCAAGATCAATGGCTGTAGATAAGATGGAGGAGAATGCTCAAGGGAGAGTTTGGACTGGTAAAGATGCAGCTTCACGAGGTTTGGTCGATGCTATTGGTGGGCTCTCTCGTGCTGTTGCTATAGCAAAACAGAAGGCAGATATACCTCAAGACAGACCGGTTACTCTTGTTGAGTTGTCAAGACCGTCGCCTACTGTATCAGAAATCTTGACTGGCATAGGAAGCTCTATAGTGGGTGTGGAGAGAACATTGAAAGAACTACTGCAAGATTTGACATTTTCGAATGGAGTTCAAGCCCGGATGGACGGTATACTGTTTCAGAAACTGGAGGAGGCTTCGGATTCCAACCCCATATTCACTCTGGTAAAGGACTACCTAAGTTCTCTCTGA 1278 42.64 MGVLMTERANLVFHNKVIDGTAMKGLISRLIDHFGMAYTSHILDQVKTLGFQQATAISISLGIDDLLTIPSKGWLVQDAEQQGLILEKHHHYGNVHAVEKLRQSMEKYSKVRKWTLGLSGGKDQIAVIRASGSISRVRSPFSIPGSGITSEQFIEKIRSVRDSKRYKAVIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGTIVAENLTLTGSIGVVTGKFNLGTLYEKIGFNKEIISRGRFAELTAAEQRPFRPDEAELFAKSAQNAYKQFRDKAAFSRSMAVDKMEENAQGRVWTGKDAASRGLVDAIGGLSRAVAIAKQKADIPQDRPVTLVELSRPSPTVSEILTGIGSSIVGVERTLKELLQDLTFSNGVQARMDGILFQKLEEASDSNPIFTLVKDYLSSL* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4964451 4975759 + Vvi17g408 Vvi17g408 779105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g408 425 PANTHER PROTEASE 4 99 424 - -
Vvi17g408 425 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 6 116 - -
Vvi17g408 425 Gene3D - 119 269 - -
Vvi17g408 425 Gene3D - 270 395 - -
Vvi17g408 425 SUPERFAMILY ClpP/crotonase 118 330 IPR029045 -
Vvi17g408 425 CDD S49_Sppa_N_C 124 339 IPR002142 GO:0006508|GO:0008233
Vvi17g408 425 Pfam Peptidase family S49 193 344 IPR002142 GO:0006508|GO:0008233
Vvi17g408 425 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 125 340 IPR004635 GO:0006508|GO:0008233
Vvi17g408 425 Gene3D RNA polymerase Rpb1, domain 3 4 65 IPR042102 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g408 K04773 sppA; protease IV [EC:3.4.21.-] - vvi:100262763 608.986
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g408 . . . . . . . . . . . Cma11g00235 . Car11g00212 Sed12g2036 . Cpe04g01437 Bhi02g00045 Tan09g1990 Cmetu02g0800 . Hepe09g0301 . . . . . . . . . . Cone16ag0253 . . . . . . . . . . . . . . . . Cmo11g00238 . . . . . . . . . . . . . . . . . . . . Lsi06g01380 Csa01g00322 Chy02g02419 Cme02g01796
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010220 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32