Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g410 ATGGCTGCGGTGGTGCCAGCACCGCCACTCTCATGGCGCAGTCACCACAGCCGCACTACCGTCTTCTACAGAATCACCCGCAAATCAAAGAACAAGTATTCTCTCCATTCAATCTTCACCCCAATAGCATCTCTTTCTCTCTCTGCTCAAACCCGCCAAACGAAGTCTCTCTCTTTCGCCAACTCTTCAACAAACCGTCAATTCTCTTCATTACATGAGATTAAGAAGCTCTGCGAATCTGGAAACCTCAAGGAAGCTTTGGATTTTCTTCAAAGAGAGTCAGACGATGTCGTTTTGGATTCCGCCCAGAGATCAGAGGCTATGGGTGTTCTTTTACAGGCCTGTGGACAACGGAAAGACATTGAGGTTGGCCGGAGACTCCATGAGATGGTTTCTGCGTCGACCCAGTTCTGTAATGATTTTGTTCTCAACACCCGAATCATTACAATGTACTCAATGTGTGGGTCTCCTTCGGATTCTCGTATGGTTTTTGATAAATTGCGGAGGAAGAACTTGTTTCAGTGGAATGCAATTGTTAGTGCGTACACCAGAAATGAACTTTTTGAAGATGCAATGTCTATCTTCTCTGAGTTGATTTCGGTGACTGAGCATAAACCCGATAATTTTACATTGCCATGCGTGATTAAGGCTTGTGCTGGGCTTTTGGATTTGGGATTGGGACAAATAATTCATGGAATGGCAACGAAGATGGATTTGGTTTCTGATGTGTTTGTGGGCAATGCTTTGATTGCAATGTATGGGAAATGTGGACTTGTCGAAGAAGCAGTTAAACGTGTCTTTGATCTTATGGATACCAAGACAGTGAGTTCTTGGAATGCTCTACTTTGTGGCTATGCACAAAATTCAGATCCTAGAAAGGCTTTAGATTTGTACCTTCAAATGACAGACTCAGGGCTGGATCCTGACTGGTTTACCATTGGTAGCTTACTTTTAGCATGTTCCCGCATGAAATCCCTACACTATGGTGAAGAAATTCATGGATTTGCCCTAAGAAATGGGTTAGCAGTGGATCCATTTATTGGTATCTCACTACTATCACTTTATATTTGTTGTGGGAAACCCTTTGCTGCCCAAGTATTATTTGATGGGATGGAGCATAGAAGTCTAGTATCTTGGAATGTGATGATTGCAGGCTACTCACAGAATGGACTCCCTGATGAAGCCATAAATCTCTTCCGTCAAATGCTTTCTGATGGAATCCAACCTTATGAGATTGCAATAATGTGTGTGTGTGGCGCTTGTTCGCAGCTGTCAGCTTTGCGACTGGGGAAAGAACTCCATTGCTTTGCTTTAAAAGCCCACTTGACTGAAGACATATTTGTCAGTTCTTCAATCATAGATATGTATGCAAAAGGTGGATGCATAGGGCTTTCTCAAAGGATTTTTGACAGACTGAGGGAGAAAGATGTGGCATCATGGAATGTTATAATTGCAGGATATGGAATTCATGGTCGCGGAAAAGAGGCCTTAGAGCTATTTGAAAAAATGCTAAGATTGGGCCTCAAGCCTGATGATTTCACATTCACTGGTATCCTTATGGCATGTAGCCATGCTGGGCTGGTTGAAGATGGTCTAGAATATTTCAATCAGATGCTGAATTTGCATAACATAGAGCCAAAGTTAGAGCATTATACTTGTGTGGTGGATATGCTAGGTCGTGCTGGACGCATAGATGATGCTTTGAGGCTTATAGAAGAGATGCCTGGGGATCCTGATTCTAGAATTTGGAGTTCATTGCTCAGTTCCTGTAGAATTCATGGTAACTTGGGTTTGGGGGAGAAAGTCGCCAACAAGTTACTAGAACTGGAGCCAGAAAAACCTGAGAATTATGTGTTAATCTCAAATTTATTTGCTGGATCAGGCAAATGGGATGATGTGAGAAGAGTGAGGGGAAGGATGAAGGACATTGGCCTTCAAAAGGATGCTGGCTGTAGTTGGATTGAAGTTGGAGGGAAAGTTCATAACTTCCTCATTGGTGACGAAATGCTCCCAGAGTTGGAAGAGGTCCGAGAGACATGGAGAAGACTAGAGGTGAAGATAAGTAGCATTGGATATACACCAGATACAGGTTCAGTGCTGCATGACTTGGAAGAAGAGGATAAAATAGGGATACTACGGGGGCATAGTGAGAAGCTTGCAATTTCTTTTGGGCTGCTGAATACAGCTAAAGGTTTACCTGTTAGGGTGTACAAGAATCTTCGCATTTGTGGGGATTGTCACAATGCGGCCAAATTCATATCAAAGGTAGTCAACAGGGATATAGTTGTGAGAGATAACAAGCGCTTCCACCATTTCAGAGATGGGATTTGTTCCTGTGGAGACTATTGGTAG 2352 43.07 MAAVVPAPPLSWRSHHSRTTVFYRITRKSKNKYSLHSIFTPIASLSLSAQTRQTKSLSFANSSTNRQFSSLHEIKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW* 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5104508 5107475 + Vvi17g410 Vvi17g410 779107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g410 783 Pfam E motif 593 655 IPR046848 -
Vvi17g410 783 SUPERFAMILY TPR-like 150 637 IPR011990 GO:0005515
Vvi17g410 783 Gene3D Tetratricopeptide repeat domain 69 226 IPR011990 GO:0005515
Vvi17g410 783 Gene3D Tetratricopeptide repeat domain 453 667 IPR011990 GO:0005515
Vvi17g410 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Vvi17g410 783 Pfam DYW family of nucleic acid deaminases 691 783 IPR032867 GO:0008270
Vvi17g410 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vvi17g410 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Vvi17g410 783 TIGRFAM PPR: pentatricopeptide repeat domain 377 409 IPR002885 -
Vvi17g410 783 TIGRFAM PPR: pentatricopeptide repeat domain 175 207 IPR002885 -
Vvi17g410 783 TIGRFAM PPR: pentatricopeptide repeat domain 479 511 IPR002885 -
Vvi17g410 783 TIGRFAM PPR: pentatricopeptide repeat domain 551 574 IPR002885 -
Vvi17g410 783 TIGRFAM PPR: pentatricopeptide repeat domain 513 541 IPR002885 -
Vvi17g410 783 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Vvi17g410 783 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 138 270 - -
Vvi17g410 783 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 265 771 - -
Vvi17g410 783 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 265 771 - -
Vvi17g410 783 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 138 270 - -
Vvi17g410 783 Gene3D Tetratricopeptide repeat domain 331 432 IPR011990 GO:0005515
Vvi17g410 783 Pfam PPR repeat 550 575 IPR002885 -
Vvi17g410 783 Pfam PPR repeat 175 199 IPR002885 -
Vvi17g410 783 Pfam PPR repeat 377 407 IPR002885 -
Vvi17g410 783 Pfam PPR repeat 247 264 IPR002885 -
Vvi17g410 783 Gene3D Tetratricopeptide repeat domain 227 330 IPR011990 GO:0005515
Vvi17g410 783 Pfam PPR repeat family 475 522 IPR002885 -
Vvi17g410 783 Pfam PPR repeat family 274 320 IPR002885 -
Vvi17g410 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 206 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g410 - - - vvi:100259264 1121.69
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g410 . . . . . . . . . . Cma10g00273 . . . . . . Bhi02g00048 . . . . . . Cla06g01516 . . . . . . . . Cone13ag0018 . . . . . . . . . . . . . . Cmo10g00292 . . . . . . . . . . . . . . . . . . . . . . . Chy02g02418 Cme02g01797
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011822 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 0 1 1 1 0 1 26