Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g412 ATGAAAGGTCGATCTCTGAAGCTGAGAGAAGCCCACAAGAGCAGTGGAGCGGCGTCATTTTGCTCCATTCTCTGGGACCTCCGCGCGCAACACCTCCTTACTTCTTCTTCTAATGACCTCTCAATTTGTATTCACGATCCGCTTCTTCCTTCCAATTCGCCCCAGATTCTTCGCCATCACAGAGATGGTGTTACTGCCTTGGCTCTCAGCCCCAATTCGACTTGCCTCGCTTCTGGCTCCATTGATCACTCCGTCAAGCTCTACAAATTTCCGGGGGGAGAATTTCAGACCAATGTTACCAGATTCACATTGCCAATCCGTGTCATTTCTTTCAATAGATCAGGTAGCATATTGGCTGCTGCTGGTGATGATGAGGGCATTAAACTTATCAATACAATTGATGGTTCAATTGCTAGGGTTCTCAAAGGACATAAAGGATCTGTCACGGGCTTAGCTTTTGATCCCAATGGTGAATACTTAGCATCTGTTGATTCAATTGGGACTGTTATACAATGGGAACTCCATTCTGGAACAGCCTTACATATCCTTAAAGGCATAGCTCCTGACACTGGTTCAGACCTTTCTGTTCTGAATGCACTTAGCTGGAGTCCTGATGGGGAGACCTTAGCAGTTCCTGGTTTGAGAAATGATGTAGTGATGTATGATAGAGACACAGCTGAGAAGCTATTTTCACTGAGAGGTGACCATAAATTTGACGATAGAATATGCTGTATGGCATGGAAGCCAAATGGAAATGCTTTAGCTGTTATTGATGTTATGGGAAAGTATGGTGTGTGGGAATCGGCTGTTCCTTCATCAATGAAATCTCCAACAGAAGATGTTCCTAGTTTGCAGTCAAAGAACAGTAATGGGCTCCTCTTGTTTGATGAGGATGAACAGGAGCCAAGTGCATCTGGCAGTTTGAGCGATCTTGGCGAAGATAGCCATGGAGAATCAGAACCGCCTAGCCGGAAAAGATTAAGAAAACAGTCTACATATGATGAAGATATTAATGATGATTTGCTGAGCTCACTTCCAAAGGTTGAGTCCCGTAAAAAGGCTTCTCATAGTCACAAGGAAAGCTTGAATAATGGGAATGAAGGGCTAAAAAGTACAACATCTGCAAGGCTGAAAATGCAGGAGGCTTTTCAGCCAGGAGCTACTCCTGTGCAACCTGGAAAAAGGCGCTTTCTTTGCTACAATATGCTTGGAAGTATAACCACAATTGAGCATGATGGCTACTCCCACATAGAGGCAAACTTTCATGACACTGGCAGTGGTCCACGAGTTCCAGCAATGACTGATTATTTTGGTTTCACAATGGCTTCATTGAATGAGCATGGAAGTGTTTTTGCAAATCCATGCAAGGGTGAGAAGAACATGAGTACTCTTATGTATCGTCCATTCAGTACCTGGGCAAATAACAGTGAGTGGTCTATGCGGTTTGAGCAAGAAGAAGTGAAGGTTGTGGCACTTGGCTCTGCATGGGTGGCTGCCGTGACTAGTCTTAATTTCCTTCGCATCTTCACTGATGGTGGCTTGCAGAGATATGTCATCTCCCTTGATGGGCCAGTGGTGACTGCATCAGGCTTTAAGGATGAACTTGCAGTTGTCACTCATGCCTCTCACTGTCTTCCATCAAATGACCAGATGCTAAAGTTCAGAGTGTTCAACATTTCTAATGGGACACAGCCCCTCAAAGGGCATGTGCCATTAACTCCTGGTTCATGTCTGACATGGTTTGGGTTCAGTGAAGAGGGCCAACTAAGTTCTTATGATTCTAAGGGAGTGCTGAGAGTGTTCACAAACCAATTTGGTGGCAGTTGGCTCCCACTCTTCAGTGCTAGTAAAGAGAAGTCAGAGGAGAACTACTGGGTGGCTGGATTGAACATGAACAAGTTGTTTTGTATTGTTTGCAAATCTCCTGATTTGTTCCCACCAGTGATGCCCAAGCCAGTTCTCACTCTTCTGGATCTTTCATTTCCTCTTGCAACCTCTGATCTGGGAGCAGAAACCCTTGAAAATGAGTTTATTTTGAAAAACATGCATCTATTGCAGATTCAACAAAGAATTGAAGAAATGGCTGCTGCAGGCCTGGACACTACTTCACTTGATGATGAGGCTTTCAATGTAGAAACTGCTCTTGACAGATGCATCTTGAGGCTGATTGCATCCTGCTGCAATGGAGATAAGATTGTGAGGGCCACTGAACTTGTAAAACTTTTATCACTGGAAAAATCAGTTAAGGGTGCGATAAAGCTTGTTACAGCCCTAAAACTACCAAATTTGGCAGAGCGGTTTAATAGTATATTGGAGGAAAGGCTACTCAATGAGACCTCCAGGCCTGCAACCCTCCCACTCACAAGCTCAAACCATGATGCATCCACCACACCTGATGTTGTAATGAGCAAGTTCTTAACTTCTATCCAAAGCAGTAAACCATCCCAACCTGTAATTCCCTTACCCTCGCCTCAACTGTCCTCTCCTCTCTTTGCAAAGAAAGGGAAACTACAAGAGGGAGCTAAAGTTGGAAATGAGAAAGTGGAACAACGCCGAACTGCAATTGTGGAGAACATAGGGAAGGTAAAGAGTTTAGCAGAGGTCAAGAGTATCGAAGATGTGACGAATCAAGGAGAGGCTAGTATAGGTGAGATAAAAAATGGTGCAGTAAATCAGCGCCCCTCTAATCCATTTGCAAAGTCATCAAGTAATCAGGAGAAATCCTCTTTATTTGATGCTATCAAGAAGATGAAGAAGGTTGATGAGACGGTGTCATACCTCCTTCACCTCCACGAGGACGAAGAGGATCACGACCACGCTCCTGAGCATATCGACACCCTCGATTCTCTTCCCTATTGGGGTCTCCATGACTTCGACAGCTTCAACGTTTTTGTTTCCGATCATCCTCCCATCGCTGTCCATACCCGTGACCTGTTCCAGACCCGGCCGGAGCGTTCGCTTCATGTTCGAGCTGTAGACGACATTTCCGAGCCCGATTCCATCACCAACGTGGATCTATTGGACCGCGAAAATCAGGTGAATTTCGTTTTGAATTTGTTTCATCAGCGTGTTGAGCAGTCGCATGTAATGGGTGAGACTGATCTGGTTTCGGAAACTCTAGATGATTCGGGTTTTGGGGTTATTGAGGGAAATGACGAAACGGGTTCGACTTATTTGGACCTGGATTTAGGGCTAGGGTTCGGTGCGGAAACGAATTGTTTGGGGGTTGAGAATTGTGATTTCTTTGTGTCTAGGAGGGTTTCTGGCTCTGAATCTGGTGAGTCATCCACGGTTTCTGCGGCGGAACCGTTTGGGAGTAGTGTAGGTTATGTTGGGTTTGAATCAGATTCGGATGAGGATGGGAATGCGTTAGAGGGAATCGATCTACAAGCTGAGGATGATTTCAGGTTGGACCAAGCTCATGATGATGATACAAGTATTCGCCTTTGTTGGGATTCACTGCAGTTAGACGATCATAGGGAGACGAATGAAGATTTCGAGTGGGAGGAAGTGGATGATGTGATTGATGAGAGAGAAGTTCTAAACATGGTTCTTGGTCCTGATGAGGAGGGACCCATCCCATTATTGCCTGTAGGTGAGCCCGTAGAAGTGGATGTGGGGAGAGAAGAAAATATGGTGAGTTTGGATTGGGAAGTTCTGTTGGCTGTTGGTAATTTGGACCGGACCCTGGAAATAGAACATGATTCAGAACCTTATTTGGCTGATCATTATGACTATATTTATACATCTGAATATGACATGTTGTTTGGCCAGTTTGCAGAAAATGAGAATGCTTTGACGGGTAGGCCACCTGCTTCAAAATCTGTTGTCAAAAATCTTCCTGTTGTGGTTTTGACACAAGGAGATGTGGAGAATAATAATGCACTTTGTGCTGTTTGTAAGGATGAGATTAATGTTGGAGAACTAGCAAAGCAGTTACCTTGCAGTCACCGCTATCATGGGGATTGCATTATGCCATGGCTTGGTATACGGAATACATGCCCTGTTTGTCGTTATGAGCTGCCTACAGATGATCCTCAGTATGAGCAAAGGAGAAACCGAAGAGCTGGTGGCCAGAGATATAAAATATTCTGTTTTAAATTTGTTGTTCCTATTTTTGTTATAGATGGTATTCGCATTAGATTATCTTGGTATAGCTTTTTTAAAGTCAGGGGCTACAGTTGTTCTGGAAAGTTTTGGTATGGATCAAAGCAGGATGAGTTTTTTCACATTTTTGTTTTTCCTTTCTGTTACATTTTCATTGGCAAGTTGTGTGTATCCTAA 4284 44.16 MKGRSLKLREAHKSSGAASFCSILWDLRAQHLLTSSSNDLSICIHDPLLPSNSPQILRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPGGEFQTNVTRFTLPIRVISFNRSGSILAAAGDDEGIKLINTIDGSIARVLKGHKGSVTGLAFDPNGEYLASVDSIGTVIQWELHSGTALHILKGIAPDTGSDLSVLNALSWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHKFDDRICCMAWKPNGNALAVIDVMGKYGVWESAVPSSMKSPTEDVPSLQSKNSNGLLLFDEDEQEPSASGSLSDLGEDSHGESEPPSRKRLRKQSTYDEDINDDLLSSLPKVESRKKASHSHKESLNNGNEGLKSTTSARLKMQEAFQPGATPVQPGKRRFLCYNMLGSITTIEHDGYSHIEANFHDTGSGPRVPAMTDYFGFTMASLNEHGSVFANPCKGEKNMSTLMYRPFSTWANNSEWSMRFEQEEVKVVALGSAWVAAVTSLNFLRIFTDGGLQRYVISLDGPVVTASGFKDELAVVTHASHCLPSNDQMLKFRVFNISNGTQPLKGHVPLTPGSCLTWFGFSEEGQLSSYDSKGVLRVFTNQFGGSWLPLFSASKEKSEENYWVAGLNMNKLFCIVCKSPDLFPPVMPKPVLTLLDLSFPLATSDLGAETLENEFILKNMHLLQIQQRIEEMAAAGLDTTSLDDEAFNVETALDRCILRLIASCCNGDKIVRATELVKLLSLEKSVKGAIKLVTALKLPNLAERFNSILEERLLNETSRPATLPLTSSNHDASTTPDVVMSKFLTSIQSSKPSQPVIPLPSPQLSSPLFAKKGKLQEGAKVGNEKVEQRRTAIVENIGKVKSLAEVKSIEDVTNQGEASIGEIKNGAVNQRPSNPFAKSSSNQEKSSLFDAIKKMKKVDETVSYLLHLHEDEEDHDHAPEHIDTLDSLPYWGLHDFDSFNVFVSDHPPIAVHTRDLFQTRPERSLHVRAVDDISEPDSITNVDLLDRENQVNFVLNLFHQRVEQSHVMGETDLVSETLDDSGFGVIEGNDETGSTYLDLDLGLGFGAETNCLGVENCDFFVSRRVSGSESGESSTVSAAEPFGSSVGYVGFESDSDEDGNALEGIDLQAEDDFRLDQAHDDDTSIRLCWDSLQLDDHRETNEDFEWEEVDDVIDEREVLNMVLGPDEEGPIPLLPVGEPVEVDVGREENMVSLDWEVLLAVGNLDRTLEIEHDSEPYLADHYDYIYTSEYDMLFGQFAENENALTGRPPASKSVVKNLPVVVLTQGDVENNNALCAVCKDEINVGELAKQLPCSHRYHGDCIMPWLGIRNTCPVCRYELPTDDPQYEQRRNRRAGGQRYKIFCFKFVVPIFVIDGIRIRLSWYSFFKVRGYSCSGKFWYGSKQDEFFHIFVFPFCYIFIGKLCVS* 1428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5125969 5136309 - Vvi17g412 Vvi17g412 779109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g412 1427 CDD RING-H2_RNF126_like 1297 1338 - -
Vvi17g412 1427 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 182 IPR001680 GO:0005515
Vvi17g412 1427 SMART WD40_4 134 173 IPR001680 GO:0005515
Vvi17g412 1427 SMART WD40_4 176 222 IPR001680 GO:0005515
Vvi17g412 1427 SMART WD40_4 225 267 IPR001680 GO:0005515
Vvi17g412 1427 SMART WD40_4 92 131 IPR001680 GO:0005515
Vvi17g412 1427 SMART WD40_4 50 89 IPR001680 GO:0005515
Vvi17g412 1427 SMART WD40_4 2 46 IPR001680 GO:0005515
Vvi17g412 1427 Pfam Ring finger domain 1297 1338 IPR001841 -
Vvi17g412 1427 Pfam Minichromosome loss protein, Mcl1, middle region 382 663 IPR022100 -
Vvi17g412 1427 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Vvi17g412 1427 MobiDBLite consensus disorder prediction 299 370 - -
Vvi17g412 1427 SUPERFAMILY WD40 repeat-like 22 281 IPR036322 GO:0005515
Vvi17g412 1427 ProSiteProfiles Zinc finger RING-type profile. 1297 1338 IPR001841 -
Vvi17g412 1427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 57 89 - -
Vvi17g412 1427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 177 - -
Vvi17g412 1427 MobiDBLite consensus disorder prediction 313 360 - -
Vvi17g412 1427 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 882 - -
Vvi17g412 1427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1257 1344 IPR013083 -
Vvi17g412 1427 SMART ring_2 1297 1337 IPR001841 -
Vvi17g412 1427 MobiDBLite consensus disorder prediction 886 905 - -
Vvi17g412 1427 Gene3D - 31 297 IPR015943 GO:0005515
Vvi17g412 1427 SUPERFAMILY RING/U-box 1276 1345 - -
Vvi17g412 1427 Pfam WD domain, G-beta repeat 139 162 IPR001680 GO:0005515
Vvi17g412 1427 Pfam WD domain, G-beta repeat 55 88 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g412 K11274 WDHD1, CTF4; chromosome transmission fidelity protein 4 - vvi:100245742 1687.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g412 . . Bda06g00505 . . . . Bma12g00953 . . . Cma11g00234 . Car11g00211 Sed08g0309 . Cpe04g01438 Bhi02g00049 Tan09g1996 Cmetu02g0986 . Hepe09g0298 . . Cla06g01517 Cam06g1673 Cec06g1734 Cco06g1730 Clacu06g1639 Cmu06g1587 Cre06g2398 Cone11ag0342 . . . . . . . . Blo15g00350 . . Bpe07g00744 . . . . . Cmo11g00237 . . . . . . . . . . . . . . . . . . . . Lsi06g01383 Csa01g00325 Chy02g02416 Cme02g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010498 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31