Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g414 ATGACCGCCCTCGACTCTGGCGCCGGCGCTCACGTCCTGGTGTTTCCATTCCCTTCACAAGGCCACATGATACCTCTCCTGGACCTCACCCATCAACTCGCCACCCGCGGGTTATCCATCACCGTCCTCGTCACCCCACAAAACCTCTCTCTCCTTAACCCTCTTCTCTCTAAACACCCATCCATCAGAACCCTAGTCTTGCCTTTTCCGCCGCACCCTTCGATTCCTGCCGGCGTGGAGAACTCCAAAGACCTGTCGGGCAAGTACTTCGAAAAATCTGGGCTAATGGATAGGGGCGGGCCCAGTTCGGTTTCGGCTGACGACATACTGACGTGGCTGGACACGTGCGGAGATAACAAGGTGGTCTACGCGTGCTTCGGAAGCCAAGCGGTGTTGAATAACAGGCAAATGGAGGGCCTGGCACTAGGCTTGGAGAAGAGCGGGGCCAGGTTTATCTGGTCCATCAAGGAGCCCACGAATGAGCACGTGGAGGGAGATCACTGGGCACTCCCACCTGGATTCGAAGATCGTGTGGCTGGGACTGGGAGAGGCCTTATAATAAGAGGGTGGAGCCCACAAGTCATGATACTGAGTCACCGAGCCGTGGGCGCGTTCTTGACTCATTGCGGGTGGAATTCGATACTAGAAGGACTTGTGGCTGGGGTGTCGATGCTTGCATGGCCCATGGCGGCTGACCAGTTTTTGAACTCAATTCTGTTGGTCAACGAGTTGAAGGTGGCGGTGAAGGTGTGCGAGGGGGCAGAAAGTGTTCCTGACTCGACCGAGTTGGCTCGAGCTGTGACGTTGTCGGTGAGTGAGAACTGGGCAGCGAGAGAGCGGGTCACCGAGTTAAGAAGGGCAGCGGTGGAAGCAATCAAACCAGGAGGGAGTTCAGCGAAGAATTTAGATGCATTGGTGAAGCATTTATCCGAATTCAATTTACAGGAAAAATAA 954 55.03 MTALDSGAGAHVLVFPFPSQGHMIPLLDLTHQLATRGLSITVLVTPQNLSLLNPLLSKHPSIRTLVLPFPPHPSIPAGVENSKDLSGKYFEKSGLMDRGGPSSVSADDILTWLDTCGDNKVVYACFGSQAVLNNRQMEGLALGLEKSGARFIWSIKEPTNEHVEGDHWALPPGFEDRVAGTGRGLIIRGWSPQVMILSHRAVGAFLTHCGWNSILEGLVAGVSMLAWPMAADQFLNSILLVNELKVAVKVCEGAESVPDSTELARAVTLSVSENWAARERVTELRRAAVEAIKPGGSSAKNLDALVKHLSEFNLQEK* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5149855 5151301 - Vvi17g414 Vvi17g414 779111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g414 317 PANTHER GLYCOSYLTRANSFERASE 7 88 - -
Vvi17g414 317 PANTHER GLYCOSYLTRANSFERASE 98 310 - -
Vvi17g414 317 Gene3D Glycogen Phosphorylase B; 5 105 - -
Vvi17g414 317 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 86 - -
Vvi17g414 317 CDD GT1_Gtf-like 10 309 IPR002213 GO:0008194
Vvi17g414 317 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 109 239 IPR002213 GO:0008194
Vvi17g414 317 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 100 311 - -
Vvi17g414 317 PANTHER UDP-GLYCOSYLTRANSFERASE 89A2 7 88 - -
Vvi17g414 317 PANTHER UDP-GLYCOSYLTRANSFERASE 89A2 98 310 - -
Vvi17g414 317 Gene3D Glycogen Phosphorylase B; 107 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g414 - - - vvi:104882328 457.603
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g414 . . . Bda15g00639 Bpe12g00509 . . . . . . . . . . Cpe20g00278 . . . . . . . . . . . . . . . Cone2ag0786 . Cone13ag0020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001996 2 4 1 3 1 3 2 3 3 1 1 3 2 1 3 1 3 5 2 3 1 1 3 1 2 3 2 1 2 3 66