Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g415 ATGGCGGAGGCAACAGACAAGAGTCCAAGACAAAGGAGCGACTCAGCGATTGAGTATAGAATTGCAATGTCGAGTGACTCGGAAACCCTAGGCTCCGATATTTCGGCAAACCAATGCCCGAAAGCCAAAGAAGCTGTGGATTTCGATTCCAACTGCTGTGGAATCTGTTTGTTAGAGGACGACAGGGCCATCAGAGGATGGGTCGATAGCTGCGACCACTACTTCTGCTTCGTTTGCATCATGGAATGGGCCAAGGTCGAGTCCCGATGTCCAATGTGCAAGCGCAGGTTCTCCACCATCCGTCGCCCGCCCAAGCCCGGTGTCTTTCCTTCCGAGCGCATTGTTAACGTGCCTGTTCGCGATCAGGCTTATCATCATTTTGGAAACGTAACAACTGGGCCTTCAGATCCTTATGCAGAAGTTGATTGTGGCATATGTCATGGTACAGCGGATGAAAGTTTTCTACTGATTTGTGATCTTTGCGACTCAGCTGCTCATACTTACTGTGTTGGCCTGGGTCACACTGTACCTGAGGGTGATTGGTTTTGCCATGATTGTACTGTTTCTAGGGCTGAACATGCCAATGGTGAAATAGATGCTGTTTTTGATGATCGGAATAATTTTAGAAACTTCTATAGAAAGCCATCAGCTGAGACGCATGTTTCTATATGTGATATTGTAGCAGAACCGTACACCCGCGAGGATGAGAGACCTCCTTCAATTGGCTCCTCACATCCAAACCGGCCGTCATCTCCCATTGCCCTAAACAGTGAAAATTTTGCTGTCAATAATAGTTCATCTATGTCAGTTGCAAGAACATTGCTCCGTTGCCGCAATGTGAATGCTCATATACAAGCATTACGTGAAAATTGGAATGCTTTGCGAAGTGGGTCCATGACATTTTCTTCTATCTTAGGTGATTCTGGAGGTGAAAGTAGTCAGAAATATAATGTTGGTGCAAGTTGTCCGAAACAAGACAACAATGCATGCTCATATGATACTGAGAAAGCATGGAAAATGATGGACAAGGCAAAATCAATTCAAAGAGCTTGTGAGAGGACTGGCATCATTCATCAGGTCTCAAAACATCCTCTGGGGAAAGTAAATGTCCCAAAAGAAGTTGCTAATGTGAAAAGCTCATCTGCAACTAATAACCGACAACTTGGAAACAAAGATTTCGGATGGCATTTCAAGCATCATTCTCTTGAAACAGATAACAAAAGATACAAACCTCAGAAGTCGGAAAATCAAGAGCAAGGTAGGGTCACTAGGACGGGGATTCCAAAATTCACTGAGAGTTCCCTAACCATTCATTCTCTAGTATCTTTTGATTCGCCATCTTCTAGGAAAGCAGAGACTTCATTTCAAGTTGATGTTCATCACAGAACTGGAGTAAGACCATCACAGAAAAATTTAGTAGACTCATTTAATGCCATTAATGAGAGAGATGGATATGGAAGCTTAATTATTCCAGATGGTCCAGTGCCCAGATCTCCCGATTTGTCTCATGCCAATCTGAAGTTTGGTGCTTCTTCCCTCTGCAAGGAAGATCTTCTTCACCGGCCAAAAGGTCGTGTGGAAATAGGAAGTGCAAAAAACAAGGCAAGAAGAGATGATGATGCCAAAAGTGAGATCCAATCTCTAGTCAAGCTCAACTTAAAGCTAATCAGCAAAGACAAACAGTTAGGAGTTGACACATTTAAGGAGGTTGCAAGGCTTGCTACTCATACCATCCTGGCAGCATGTGGATTAGAGCATTCAAAGTCGTGCGTCCGCTCCTTCCCAACCTCTATGTGCACTCATTCTGAACAGGTTCAGCAGCTCCACAAGTCCACTCTAATGCCCAGGTCTTGCAGAGAATGCTTTTATGCCTATGTAAAAGATGTTGTCAACTTCATCACAGTTGAGAAAATGGGTTCTACTGGATCATGTAGGGTCTTACCTTAG 1947 44.02 MAEATDKSPRQRSDSAIEYRIAMSSDSETLGSDISANQCPKAKEAVDFDSNCCGICLLEDDRAIRGWVDSCDHYFCFVCIMEWAKVESRCPMCKRRFSTIRRPPKPGVFPSERIVNVPVRDQAYHHFGNVTTGPSDPYAEVDCGICHGTADESFLLICDLCDSAAHTYCVGLGHTVPEGDWFCHDCTVSRAEHANGEIDAVFDDRNNFRNFYRKPSAETHVSICDIVAEPYTREDERPPSIGSSHPNRPSSPIALNSENFAVNNSSSMSVARTLLRCRNVNAHIQALRENWNALRSGSMTFSSILGDSGGESSQKYNVGASCPKQDNNACSYDTEKAWKMMDKAKSIQRACERTGIIHQVSKHPLGKVNVPKEVANVKSSSATNNRQLGNKDFGWHFKHHSLETDNKRYKPQKSENQEQGRVTRTGIPKFTESSLTIHSLVSFDSPSSRKAETSFQVDVHHRTGVRPSQKNLVDSFNAINERDGYGSLIIPDGPVPRSPDLSHANLKFGASSLCKEDLLHRPKGRVEIGSAKNKARRDDDAKSEIQSLVKLNLKLISKDKQLGVDTFKEVARLATHTILAACGLEHSKSCVRSFPTSMCTHSEQVQQLHKSTLMPRSCRECFYAYVKDVVNFITVEKMGSTGSCRVLP* 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5154402 5159799 + Vvi17g415 Vvi17g415 779112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g415 648 SMART PHD_3 142 187 IPR001965 -
Vvi17g415 648 SMART ring_2 53 93 IPR001841 -
Vvi17g415 648 SMART ring_2 143 186 IPR001841 -
Vvi17g415 648 MobiDBLite consensus disorder prediction 234 255 - -
Vvi17g415 648 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 1 638 - -
Vvi17g415 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 207 IPR013083 -
Vvi17g415 648 PANTHER F18C1.6 PROTEIN 1 638 - -
Vvi17g415 648 ProSiteProfiles Zinc finger PHD-type profile. 140 189 IPR019787 -
Vvi17g415 648 ProSiteProfiles Zinc finger RING-type profile. 53 94 IPR001841 -
Vvi17g415 648 Pfam PHD-finger 143 188 IPR019787 -
Vvi17g415 648 Pfam Ring finger domain 52 94 IPR001841 -
Vvi17g415 648 CDD RING-HC_Topors 53 94 - -
Vvi17g415 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 102 IPR013083 -
Vvi17g415 648 SUPERFAMILY FYVE/PHD zinc finger 136 189 IPR011011 -
Vvi17g415 648 ProSitePatterns Zinc finger RING-type signature. 71 80 IPR017907 -
Vvi17g415 648 SUPERFAMILY RING/U-box 47 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g415 - - - vvi:100266325 1338.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14194 PF00628 PHD 4.30E-09 CL0390 Vvi TR