Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g417 ATGGAGCTTCCTCAACCCCGCCCTTTTGGAACCGAAGGTAGGAAACCAACACATGATTTTTTGTCACTGTGCAGTCATTCAACTGTTCAACAAGATCCAAGACCTTCTCAAGCAGGTTACCTAAAAACTCATGATTTCCTACAACCACTGGAACGGGGAGAGAAAAACAGCATCAAGGAAGAAAATGCAATTGAGATAAGAACTGTGGATAAACCACCACCACCAGCTCCTCCCCCAAACTCTTCAGTTGAGCACATTCTCCCGGGGGGAATTGGGACTTATAGTATAAGCCACATTTCCTATTTTAATCAAAGGCTTCCAAAGCCAGAGGGATCAATATTTACAGCAGCTCAAGCAAGTACGTCCGATAGAAACGAAGAAAATTCGAACTGTAGTTCTTATACTGGAAGTGGCTTTACATTGTGGGAAGAAACTGCAGTAAAGAAAGGAAAGGCAGGGAAGGAGAATGCAGTAGAAAGATCCATTGGAATAGAGCCGGCGGTGAAGTTGGGGCAATGGACATCGGAGCGGCCATCTCAATCCCCTTCCAACCATCGTAGCAGCTTCAGCTCTCTCTCATCCTCTCAGTCATCTGGGCAGAAGAACCAGAGCTTCATGGAGATGATACAGTCAGCTTCAGCTAAAGGTACCCAGGAAGAGGAAGAAGAAGATGAAGAGGAGTTTGTTCTTAAGAAAGAAAGCTCCTCAAACAAAGGGGATTTGACTGTGAAAGTAGATGGGAAGAGCAGTGATCAGAAGGCTGTCACGCCGCGCTCAAAACATTCCGCAACTGAACAGAGGAGGAGGAGCAAGATAAACGACAGGCGAGTATTTCAGATGTTGAGAGACCTTATCCCTCATAGTGACCAAAAGAGAGACAAAGCATCATTCTTATTAGAGGTCATCGAGTACATTCAGTTTTTACAAGAAAAAGTACATAAATATGAAGGTTCATTCCAAGGGTGGAACCACGAATCAGCAAAATTGATGCCATGGCGAAACAGTCACAGGCCAGCAGAAAGTTTTGCTGATCAATCTCGAGGCATAAATAGTGGGTCTGGTCCAGCATTAATGTTTTCTGCTAAGTTTGATGAGAATAATGTTGCTGTCTCCCCAAACATTTCCAGGAACACACAGAACCCTGTTGAATCTGACTTGAGTGCTTCTACTACCTTCAAAGCAATGGATCGCCACCCTGGACTAACAAACAAGGCGGTACCCATTCATATGCAGTTGCAGCCAAACATCTTCACTCCTGTTGTGGGAGGTGGTGGACTAGCCCAACTTCCGCCTAGGCTGGCACCTGATGCTGAAAATATGGCATCTCTGCCACAATCCCAGTTATGGCAGAGCAGATCATCTGTTACCACTGAGTGCACTGTTGCAAGTGATAAGTTGAAAGAGCAGGAGCTAACTATTGAAGGGGGTACCATCAGCATCTCGAGTGCATATTCCCAAGGGTTGTTGAATACTCTGACACAAGCATTGCAGAGTTCGGGAGTGGACTTGTCAAAAGCCAGCATTTCAGTGCAAATTGATTTAGGTAATAAAGCAAACAGCAGACCTACTGCCCCAACACCCATTATCAAGGATAACCAGGTTCCCTCTAGTAATCATGCCACGGCACGTTCTAGAGTTGCAAGCAGTGGTGGAGACTCTGACCAAGCCCTGAAAAGGCACAAGACTTGCAAAAACTAA 1698 45.41 MELPQPRPFGTEGRKPTHDFLSLCSHSTVQQDPRPSQAGYLKTHDFLQPLERGEKNSIKEENAIEIRTVDKPPPPAPPPNSSVEHILPGGIGTYSISHISYFNQRLPKPEGSIFTAAQASTSDRNEENSNCSSYTGSGFTLWEETAVKKGKAGKENAVERSIGIEPAVKLGQWTSERPSQSPSNHRSSFSSLSSSQSSGQKNQSFMEMIQSASAKGTQEEEEEDEEEFVLKKESSSNKGDLTVKVDGKSSDQKAVTPRSKHSATEQRRRSKINDRRVFQMLRDLIPHSDQKRDKASFLLEVIEYIQFLQEKVHKYEGSFQGWNHESAKLMPWRNSHRPAESFADQSRGINSGSGPALMFSAKFDENNVAVSPNISRNTQNPVESDLSASTTFKAMDRHPGLTNKAVPIHMQLQPNIFTPVVGGGGLAQLPPRLAPDAENMASLPQSQLWQSRSSVTTECTVASDKLKEQELTIEGGTISISSAYSQGLLNTLTQALQSSGVDLSKASISVQIDLGNKANSRPTAPTPIIKDNQVPSSNHATARSRVASSGGDSDQALKRHKTCKN* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5177471 5186799 + Vvi17g417 Vvi17g417 779114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g417 565 MobiDBLite consensus disorder prediction 516 565 - -
Vvi17g417 565 Gene3D - 254 329 IPR036638 GO:0046983
Vvi17g417 565 CDD bHLH_AtBIM_like 255 333 - -
Vvi17g417 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 308 IPR011598 GO:0046983
Vvi17g417 565 MobiDBLite consensus disorder prediction 516 551 - -
Vvi17g417 565 Pfam Helix-loop-helix DNA-binding domain 258 309 IPR011598 GO:0046983
Vvi17g417 565 MobiDBLite consensus disorder prediction 173 215 - -
Vvi17g417 565 MobiDBLite consensus disorder prediction 169 273 - -
Vvi17g417 565 MobiDBLite consensus disorder prediction 229 273 - -
Vvi17g417 565 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 562 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vvi17g417 565 SMART finulus 262 314 IPR011598 GO:0046983
Vvi17g417 565 PANTHER TRANSCRIPTION FACTOR BIM1 1 562 - -
Vvi17g417 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 335 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g991 Vvi17g417 ECH
Vvi14g984 Vvi17g417 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14195 PF00010 HLH 6.30E-12 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g417 - - vvi:100243993 1061.98