Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g421 ATGGGAGCAGCGACGAGGAAGAAGGTGCAGAGGAAGTTCAAGATCAGAGGTTATACCCTTAAAGTGGAAGCCCTAGACGAGATCCTTTCTTTCTTGAGCCACTTCCAAGACGCTGAAGATGAGGCCATCGATCTCCTCCTCGACGAGCTCGAAAACGAATCTTTGAAATCTTCTATATTAGATAAAGAATCAGTGCATCGGGTCGTCAGCCTCCTATTGGAGGCAGAAGCAGCAGTTGAGGAAACTCCCGGGGCCATCAGTACTCGATCTGCACTTCGCATAGTTGATGCATTCTTGATGTCTAAATTTTGTTATGATCCAATAAAAAAGATCTTCTATGAGAATACAGGGAGGCTTGCGATTCACGGTGATGCTTCTGCCAAATCTGCTTTATACAGAAATAGGTTTCTGTTGTTGTTCCAGAGGCTTTCTCGTGATCAGCACTTTTCTAAACCTGCATTCGATACTGAAATGTCTCATTTTGGAAGCTGCGAGATATCACCAATTCAGTCTTTGATTGGGCAAACGGGCAAGAGATGGGTGATGGGTGTTATATCTCAGTTGGAAGATGGCCATTTCTTCTTGGAAGATCTTACTGCATCACTTGCATTGTTGCACCAGCAATACAAAATTACAACAGGATTTTTTTCAGAGAACACAATAATTGTAGCAGAAGGTGAGATGTTCTTGGATGGTATTTTTCAGGTTAGTACATGTGGATTTCCTCCATTAGAGGACAGAGATGAATCCCTTGCATCACTTTCGGGACTTGACTTCTTTGGCGGTGGTACACTAACTAGAGAGGAAACTCTCAGACTTGCAGGACTGGAAAAAAAGGCTGTGAATGACATGTTTGTGATACTCTCTGATGTTTGGCTGGACAATGAAGAGACTATGGGAAAGCTAGCGACTGTCCTGGATGGTTACGAGAATGTGGAGGTGGTTCCTTCCCTATTTATCTTCATGGGGAATTTCTGTTCTCATCCATGTAATCTTTCCTTTCATTCTTTCTCAAGTCTTAGATTGCAGTTTGGAAAGCTTGGACAGATGATTGCATCTCATCCACGACTAAAAGAGCATAGTCAATTTCTGTTTATTCCAGGTCCTGATGATGCAGGTCCATCAACAGTGCTTCCTAGGTGTGCCTTGCCTAACTATCTGACTGAAGAGTTCAAGAAGTACATTCCAAATGCCATATTCTCCAGTAACCCTTGCAGAATCAAGTTTTACACCCAAGAAATCGTGCTTTTCCGTCAGGATCTTCTGTACAGAATGCGCCGTTCATGTCTAGTGCCTCCTTCACCAGAAGAAACCAGTGATCCTTTTGAGCATCTTGTTGCCACCATAACACATCAAAGTCATCTTTGCCCCCTCCCTCTTAGTGTACAACCCATTATTTGGAATTATGATCACTGTCTTCACCTCTATCCAAATCCACATACGATAGTTTTGGGTGACAGAAGTGAGCAGAAGGCATTCAAGTACACGGGAATCATGTGTTTTAATCCTGGTTCCTTCTCAAATGAGAGCACTTTTGTAGCATATCGACCTTGTACCCAAGAAGTTGAACTGTCAGCCTTGTAA 1584 42.99 MGAATRKKVQRKFKIRGYTLKVEALDEILSFLSHFQDAEDEAIDLLLDELENESLKSSILDKESVHRVVSLLLEAEAAVEETPGAISTRSALRIVDAFLMSKFCYDPIKKIFYENTGRLAIHGDASAKSALYRNRFLLLFQRLSRDQHFSKPAFDTEMSHFGSCEISPIQSLIGQTGKRWVMGVISQLEDGHFFLEDLTASLALLHQQYKITTGFFSENTIIVAEGEMFLDGIFQVSTCGFPPLEDRDESLASLSGLDFFGGGTLTREETLRLAGLEKKAVNDMFVILSDVWLDNEETMGKLATVLDGYENVEVVPSLFIFMGNFCSHPCNLSFHSFSSLRLQFGKLGQMIASHPRLKEHSQFLFIPGPDDAGPSTVLPRCALPNYLTEEFKKYIPNAIFSSNPCRIKFYTQEIVLFRQDLLYRMRRSCLVPPSPEETSDPFEHLVATITHQSHLCPLPLSVQPIIWNYDHCLHLYPNPHTIVLGDRSEQKAFKYTGIMCFNPGSFSNESTFVAYRPCTQEVELSAL* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5206884 5213522 + Vvi17g421 Vvi17g421 779118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g421 527 Gene3D - 3 70 - -
Vvi17g421 527 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 6 526 IPR016266 GO:0003677|GO:0006261|GO:0008622
Vvi17g421 527 Pfam DNA polymerases epsilon N terminal 4 69 IPR024639 -
Vvi17g421 527 PIRSF DNA_pol_epsilon_2 2 527 IPR016266 GO:0003677|GO:0006261|GO:0008622
Vvi17g421 527 Pfam DNA polymerase alpha/epsilon subunit B 285 490 IPR007185 GO:0003677|GO:0006260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g421 K02325 - vvi:100257823 1011.52