Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g423 ATGCAAGATATACATTCAATGGGTGCTGGAGGAGGCCGGATCTTTGGAGGTGACCGGAGGCTGCGGCCGCACCAGAACCAGGCCTTGAAGTGTCCGCGCTGTGAATCGCTCAACACTAAATTCTGCTACTATAACAACTACAACCTCTCTCAGCCTCGCCATTTCTGCAAGAGCTGTCGGCGGTACTGGACCAAAGGGGGCGTCCTCCGTAATGTTCCTGTTGGAGGCGGTTGCCGGAAGACCAAGCGGTCCAAGGCGAAGTCGTCATCCGACGCTCCGCGTGAGCGGAAATCGAACTCTCATTCCAGTAGCGAAAGCTCGAGCCTTACCGCTACCACCACCGCGGCGGCGACGACCGCCACGACGGAGGCGGTGTCGGCGCCCTCTTCGAACGCCGCGTCGACCTTGATGACGGGGTCGAACGATCCAGCGGCTCTTGGATTCAATATTTCCGACATTTCACCGTTCAAATATCAAGAACAAGAGATCACCGCGGGATTTCTTGATCAGACTGTTCAGGTGGAGTTATCAGCGTTGCAGAACAGGTCAAACCATGGCGGATTCCCATCGTTGGATTGGCAGACCAGTGGTGATCAAGGTATCTTCGATCTTCCTGGAAACGTTGATCAAGGCTACTGGACTCAGAGTCAATGTGTCCTTTTTTCCCCCTTGTTGGGGTTTTCCTTTTTTCTTTCTAATGTATTTCCAATTAAATTAATCAAATATAGGAAAAATATAGAGTGTTTTGTTTGTTTGGATGCTTCCTAA 768 51.3 MQDIHSMGAGGGRIFGGDRRLRPHQNQALKCPRCESLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSKAKSSSDAPRERKSNSHSSSESSSLTATTTAAATTATTEAVSAPSSNAASTLMTGSNDPAALGFNISDISPFKYQEQEITAGFLDQTVQVELSALQNRSNHGGFPSLDWQTSGDQGIFDLPGNVDQGYWTQSQCVLFSPLLGFSFFLSNVFPIKLIKYRKNIECFVCLDAS* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5240729 5241938 + Vvi17g423 Vvi17g423 779120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g423 255 MobiDBLite consensus disorder prediction 102 135 - -
Vvi17g423 255 MobiDBLite consensus disorder prediction 84 101 - -
Vvi17g423 255 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Vvi17g423 255 PANTHER DOF ZINC FINGER PROTEIN 4 19 216 - -
Vvi17g423 255 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g423 255 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 216 IPR045174 GO:0003700|GO:0006355
Vvi17g423 255 MobiDBLite consensus disorder prediction 74 135 - -
Vvi17g423 255 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Vvi17g423 255 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1560 Vvi17g423 ECH
Vvi1g924 Vvi17g423 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14196 PF02701 zf-Dof 4.80E-33 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g423 - - vvi:100262950 355.14