Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g43 ATGTTGAATGCTCCATCGCCAGCCAACAATATCCCAGTCTCCTTCTCTCCACCATCGCCACTACCATCATCTCCATCTCTCTTCTTTGTGTACTCTGCCGCTATGAAAATACCTGAAACTGAGCATATCAACCAGCTTATCTCTTCTCTGTCTGATGAGATACCTCATATACAGACCTTCAAAGGGAAATGGGCAGTTATCAGAGGCAAGCTGGGTGATCTCAGGACCCAAGTGGCTGATTTTGGTGACTTTCCTGGGTTCAAGTCCAATCCTCTTTCTATGGAACTCATGCAGTCCATTTCGCAGACCCTACAAGACGCCGTTTTGGTGGCTTCGAGGTGTAGAGAGTCTGAGTTGTCTCAGGGGAAGCTCAAGACCCAGAGCGATATAGACTCGATTTCCGCGAAGCTGGACCGTTTGATCAAAGATGGTGAGATCTTGATAGGGAGTGGAGTGCTTCAAGATGGGGTATTGGTGGGTTCGAAGAGGGAAGTGGTGCGAGCGGAGGCGAGGAACTTGATAACTCGGTTGCAGATTGGGAGTTCCGAGTCCAAGAACTCGGCGATGGACTCGTTGTTGGGTTTGCTCTCTGAGGATGACAAGAACGTGATGATCTCGGTGGCACAAGGCGTGGTTCCGGTGCTCGTACGCCTACTCGATTCCAGCTCTTCTGCTTGTGTTGCCCTCCAATCTCTGAGCTTTTCGAAAGAGAACGCTAGGGCAATTGGGTGTAGAGGTGGAATTTCATCTCTATTAGAGATTTGTGATGCTGGGACGCCGAGTTCTCAGGCTGTTGCGGCTGGGGTTTTGAGGAATCTTGCTGGGTTTCAAGAAATAAAGGAGAATTTCATCGAGGAGAATGCGATTTCTGTTATTCTTAGGCTTCTGGCTTCGGGAACAGCCTTTGCGCAAGAAAATGCAATTGGGTGTCTGTGTAATTTAGTATCTGAAGATGAGAATTTGAAGCTTTTGGTTGCTAGGGAGGGAGGGATCCAGTGTTTGAAGAATTTCTGGGATTCAGTTGGGGCAGTTGGAAGTCTTGAAATTGCTGCCGAGTTCTTGAGACACTTGGCTTTGTGCCCGTCAATTGCAGAAGTGCTTGTTTCTGATGGATTTATTGGTCGGCTCATGGTGCTGTTGAATTGTGGGGTGGTAGGTGTGAGAATTGCCGCAGCTAAGGCTGTTGATGCATTGGGCTTTAGCACAAAATCGAGGAAAGAGATGGGTGAATGTGGGTGTATTCCTCCATTGGTTGGAATGTTGGATGGTAAGTCTATTGAAGAGAAAGCAGCAGCGGCGAAGGCATTGTCCAATCTCATGCTCTATGTGGGCAATAGAAAGATTTTTCGGAAGGATGAAAGGGGAATAGTAGGGGCAAAAGCAAATGGTTGCTGCCGGTGCTTGTGTATACTTGCAGAAACTCAAGCCAATAAATTAATAATGCTTTATTCTCTATGA 1458 47.33 MLNAPSPANNIPVSFSPPSPLPSSPSLFFVYSAAMKIPETEHINQLISSLSDEIPHIQTFKGKWAVIRGKLGDLRTQVADFGDFPGFKSNPLSMELMQSISQTLQDAVLVASRCRESELSQGKLKTQSDIDSISAKLDRLIKDGEILIGSGVLQDGVLVGSKREVVRAEARNLITRLQIGSSESKNSAMDSLLGLLSEDDKNVMISVAQGVVPVLVRLLDSSSSACVALQSLSFSKENARAIGCRGGISSLLEICDAGTPSSQAVAAGVLRNLAGFQEIKENFIEENAISVILRLLASGTAFAQENAIGCLCNLVSEDENLKLLVAREGGIQCLKNFWDSVGAVGSLEIAAEFLRHLALCPSIAEVLVSDGFIGRLMVLLNCGVVGVRIAAAKAVDALGFSTKSRKEMGECGCIPPLVGMLDGKSIEEKAAAAKALSNLMLYVGNRKIFRKDERGIVGAKANGCCRCLCILAETQANKLIMLYSL* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 359708 361734 + Vvi17g43 Vvi17g43 778740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g43 485 SUPERFAMILY ARM repeat 170 455 IPR016024 -
Vvi17g43 485 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g43 485 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 225 458 - -
Vvi17g43 485 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 41 224 - -
Vvi17g43 485 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 41 224 - -
Vvi17g43 485 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 225 458 - -
Vvi17g43 485 Pfam Armadillo/beta-catenin-like repeat 404 439 IPR000225 GO:0005515
Vvi17g43 485 Gene3D - 161 277 IPR011989 -
Vvi17g43 485 SMART arm_5 401 441 IPR000225 GO:0005515
Vvi17g43 485 SMART arm_5 235 275 IPR000225 GO:0005515
Vvi17g43 485 SMART arm_5 276 316 IPR000225 GO:0005515
Vvi17g43 485 SMART arm_5 199 234 IPR000225 GO:0005515
Vvi17g43 485 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 287 329 IPR000225 GO:0005515
Vvi17g43 485 Gene3D - 278 345 IPR011989 -
Vvi17g43 485 Gene3D - 346 483 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g43 - - - vvi:100256102 828.935
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g43 . . . Bda15g00690 Bpe12g00464 . . . . Cmo18g00236 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0250 Cone19ag0232 . . . . . Blo15g00195 . . . . . Bma08g00274 . . . . Cma18g00298 . Car18g00246 Cpe09g00945 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003996 1 3 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 2 1 1 1 1 4 2 1 43