Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g435 ATGGGGGTGCGGAGGACGCAGCAAGAGAGATTCTCTGTAGATTTTGTGATGGGAGGAGGGGCAGCGGTGTTAGCAAAGAGCGCAGCAGCGCCCATTGAAAGAGTGAAGCTTTTGTTGCAGAACCAGGGGGAGATGTTGAAGAGGGGTCATCTCAAGAGGCCTTATATGGGCGTTGCTGATTGCTTTTCAAGGGTTTTCAGAGAGGAAGGAGTCTTGGCTTTTTGGAGAGGTAACCAGGCCAATGTCATCAGATATTTCCCTACCCAGGCTTTCAACTTTGCATTCAAAGGTTACTTCAAGAGCCTGTTTGGATGTTCAAAAGAGAAAGATGGATACCTAAAGTGGTTTGCTGGAAATGTAGCTTCAGGAAGTGCTGCTGGAGCAACCACTTCATTGTTTCTGTATCACTTGGATTATGCACGTACCCGACTAGCTACAGATGCGAGGGATGGTCAACGCCAGTTCAAAGGCCTATTAGATGTTTACAGTAAAACCCTGTCAACAGATGGAATTGCAGGCCTATATCGGGGATTTGGGATTTCAATCATGGGGATTACTCTATATCGAGGCATGTATTTTGGTATCTATGACACCATGAAGCCCATTGTTCTGGTGGGGCCTTTCGAGGGTAATTTCTTTGCTAGTTTCTTGTTGGGTTGGAGCATAACAACAGTTTCCGGGGTCTGTGCCTATCCCTTTGACACTCTGCGGAGGAGAATGATGCTGACCTCTGGACAACCCTTGAAGTATAGCAGTACTATGCATGCGGTTCTTGAGATTGTCCGTCTTGAGGGTTTCACTGCACTCTACCGAGGAGTCACTGCAAACATGCTTCTTGGCATGGCAGGGGCTGGAGTACTTGCAGGCTATGATCAGCTCCACCGAATTGCCTATAGACGTGGTTATGGTTTTGAGCCTCTTCAAAAGGTCTAG 933 47.48 MGVRRTQQERFSVDFVMGGGAAVLAKSAAAPIERVKLLLQNQGEMLKRGHLKRPYMGVADCFSRVFREEGVLAFWRGNQANVIRYFPTQAFNFAFKGYFKSLFGCSKEKDGYLKWFAGNVASGSAAGATTSLFLYHLDYARTRLATDARDGQRQFKGLLDVYSKTLSTDGIAGLYRGFGISIMGITLYRGMYFGIYDTMKPIVLVGPFEGNFFASFLLGWSITTVSGVCAYPFDTLRRRMMLTSGQPLKYSSTMHAVLEIVRLEGFTALYRGVTANMLLGMAGAGVLAGYDQLHRIAYRRGYGFEPLQKV* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5419517 5430208 + Vvi17g435 Vvi17g435 779132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g435 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 296 IPR018108 -
Vvi17g435 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 102 IPR018108 -
Vvi17g435 310 PRINTS Mitochondrial carrier protein signature 14 27 IPR002067 GO:0055085
Vvi17g435 310 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
Vvi17g435 310 PRINTS Mitochondrial carrier protein signature 77 97 IPR002067 GO:0055085
Vvi17g435 310 PRINTS Mitochondrial carrier protein signature 129 147 IPR002067 GO:0055085
Vvi17g435 310 PRINTS Mitochondrial carrier protein signature 175 193 IPR002067 GO:0055085
Vvi17g435 310 PRINTS Mitochondrial carrier protein signature 219 241 IPR002067 GO:0055085
Vvi17g435 310 PANTHER ADP,ATP CARRIER PROTEIN ER-ANT1 6 306 - -
Vvi17g435 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 202 IPR018108 -
Vvi17g435 310 Pfam Mitochondrial carrier protein 9 104 IPR018108 -
Vvi17g435 310 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Vvi17g435 310 Pfam Mitochondrial carrier protein 211 297 IPR018108 -
Vvi17g435 310 SUPERFAMILY Mitochondrial carrier 9 293 IPR023395 -
Vvi17g435 310 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 6 306 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g435 310 PRINTS Adenine nucleotide translocator signature 11 23 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g435 310 PRINTS Adenine nucleotide translocator signature 55 76 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g435 310 PRINTS Adenine nucleotide translocator signature 88 100 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g435 310 PRINTS Adenine nucleotide translocator signature 114 127 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g435 310 PRINTS Adenine nucleotide translocator signature 215 231 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi17g435 310 Gene3D Mitochondrial carrier domain 12 302 IPR023395 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g435 K05863 - vvi:100263960 602.823