Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g437 ATGGGTAGGGGCAGGGTTCAGTTGAAGAGGATTGAGAACAAGGTAAATAGGCAGGTGACCTTTTCAAAGAGGAGGTCTGGATTGTTGAAGAAGGCTCATGAGATCTCAGTTCTTTGTGATGCAGAGGTGGCCCTGATTGTCTTCTCCACTAAGGGGAAGCTCTATGAGTACTCCACCGATTCCTGCATGGAAAGAATCCTCGAACGATATGAGAGGTATGCGTATGCACAGAGTCAGCTTATTGCCACCGATCTTGAATCACAAGGAAGCTGGACACTTGAATATGCAAAGCTCAAGGCTAGGATGGAGGTTCTACAAAAAAGCCAAAGAAATTTTATGGGAGAAGACCTTGACTCCTTGAGTCTCAAAGAGCTTCAGAATTTGGAGCAACAGCTTGATAATTCTCTTAAAAGCACAAGAACAAGAAAGAACCAACTCATGTATGAATCCCTTTCTGAGCTTCATAAAAAGGGTAAGGCGTTGCAGGAGGAACATGACTTGCTTACTGCAAAGGTGCAGGAGAAGGAGAAGGAACAGGCTGAACAGGCACAATGGAATCAGCAAAACCAGGACCTGGACTCACCATCCTTTCTTCTACAACAGCCATTGCATGCACTAAATATTAGTGGTAATTGCTTGGCAAGGGATAGTGGAGATGATCAAGGAATTCCACCTCAAAATCGAACCAATACACCCCTTCCTGCTTGGATGCTGCGCCATGTTAATAAATAG 732 44.54 MGRGRVQLKRIENKVNRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYEYSTDSCMERILERYERYAYAQSQLIATDLESQGSWTLEYAKLKARMEVLQKSQRNFMGEDLDSLSLKELQNLEQQLDNSLKSTRTRKNQLMYESLSELHKKGKALQEEHDLLTAKVQEKEKEQAEQAQWNQQNQDLDSPSFLLQQPLHALNISGNCLARDSGDDQGIPPQNRTNTPLPAWMLRHVNK* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5434019 5452793 - Vvi17g437 Vvi17g437 779134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g437 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi17g437 243 Coils Coil 122 142 - -
Vvi17g437 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vvi17g437 243 Coils Coil 158 190 - -
Vvi17g437 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 205 - -
Vvi17g437 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi17g437 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 205 - -
Vvi17g437 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi17g437 243 MobiDBLite consensus disorder prediction 216 243 - -
Vvi17g437 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi17g437 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi17g437 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi17g437 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi17g437 243 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Vvi17g437 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi17g437 243 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vvi17g437 243 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g994 Vvi17g437 ECH
Vvi1g8 Vvi17g437 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14197 PF01486 K-box 6.00E-27 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g437 K09264 K09260 vvi:100257072 454.521