Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g438 ATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAAATTAACAGGCAGGTGACATTTGCTAAGAGAAGGAATGGTCTTCTCAAGAAAGCTTATGAGCTCTCTGTTCTCTGTGACGCTGAGGTTGCTCTCATCGTTTTCTCTAGCCGTGGCAAACTCTATGAGTTCTGCAGCGGCCCTAGCATGGCGAAAACACTTGAGAAGTACCAAAAGTGCAGCTATGGTGCATTGGAAGCCAGCCAACCTGTCTATGAACTCACTCAGAGCAGCTATCAGGAGTATTTGAAGCTAAAGACAAGAGTGGAGGTCCTACAGCGGTCTCAGAGACACCTTCTTGGGGAAGACTTGGACCCGCTAAACACAAAGGAGCTTGAGCAGCTTGAGCATCAACTCGAGATGTCCCTGAAGCAAATTAGGTCCACAAAGACTCAAAATATGCTTGATCAACTAGCAGATCTTCAAAATAAGGAACATATGCTAATTGAAGCTAACAATGCCCTGAGAAGGAAGCTGGAAGAATCTAATGGAAAACATCCCCTTCAACAGTCATGGGAAGCGGCAGGAAACAGTGCTCTCTACAGTCGCCTTCCTGCTCAATCAGAGGGGTTTTTCCAGCCTCTGGAACGCAATTCCACATTGGAAATGGGATACAATGCTGCAGGATCCAATGAGATAACTCTTGCGGCCCCATCCCAAAATGACAATGGATTTGGCCCCGGATGGATGCTTTGGATATAA 741 46.69 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFCSGPSMAKTLEKYQKCSYGALEASQPVYELTQSSYQEYLKLKTRVEVLQRSQRHLLGEDLDPLNTKELEQLEHQLEMSLKQIRSTKTQNMLDQLADLQNKEHMLIEANNALRRKLEESNGKHPLQQSWEAAGNSALYSRLPAQSEGFFQPLERNSTLEMGYNAAGSNEITLAAPSQNDNGFGPGWMLWI* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5457737 5464643 - Vvi17g438 Vvi17g438 779135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g438 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi17g438 246 Coils Coil 151 174 - -
Vvi17g438 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi17g438 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi17g438 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Vvi17g438 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi17g438 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Vvi17g438 246 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi17g438 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi17g438 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi17g438 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi17g438 246 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Vvi17g438 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi17g438 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi17g438 246 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vvi17g438 246 Coils Coil 125 145 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g9 Vvi17g438 ECH
Vvi14g996 Vvi17g438 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14198 PF01486 K-box 2.10E-28 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g438 K09264 - vvi:100251943 490.345