Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g439 ATGATATTAGTAATTTGGAGCATTTATAGAAACCCTGAACTGTGGACGTTACAAGTGAGAAACGTACGGAGGTTTAAGGAAGAGACTGAAAGCGCAGGAAAAGATCTACTTGAAAACGTGTTTCCCTCTGCTGGCTTCAGAAATGAACTCAAGTATATAGAAGTCAAAAGGGACCCTAAGATCATTGTGGATGACATGAATGAAAATGGGAATAATGCTATCTTACCAGAACATTGTACAGGTTTCTTGTTCTGCAGAAGAGTTCCCTTCGCAAAAGTGCTTTTAGGAGTGATCGAAGGAGGCACATTAAATCCTCCTTTTCAAATGTTGCGCCCAAAGCGACATCGAACGACTAAAACAGATGGGCATGCGAGATCATCTAAAAAAGGTAGTCAAGTGAGATCATCTAAAAAAGATGGTCGAGCAAGCACGACTAAAAAAGATGGTCCGGTAAATGATTTACTACCAGAACTTATCTCTGAGATCCTATCCAGACTTCCAATAGAATTAATCTTGAGATGCCGAAGCGTATGCAAGACCTGGAACTCTGTGATTCAAAGTCCTCTTTTCATCAACCTGCAAGCGAGAAAAAGCCATAATCAACCATCTCGGGTCATCCTCAAACCAATATTTGGCGGGGTTACAGCGACAACTATGCACAGCTTATTTTTACTGGATACTGAGGAACGCAAAAGTAGACGAATTCATGATAAGAGCTGGCGGTTTAGTGGTCTCCAAATCATGTCTTCTTGCAATGGTTTGCTCTGTATAACTTCAGATAGTGAGCTAGGTCCTGTTTACATATCTAATCCAATAACTAGAGAGTTTGTAATCTTGCCATCCCCAGAGACAGGTTTTAGTTTACTCAGACATCAGGTTGGTCTCGGGTTTGATTCCTCTAATGGCAAGTACATTGTCGTGCGAGCGTATACAGATAAAAGCAAAAGTCAAGTCAACAAGTTTGAGGCTATTATGTTAGGAGAAAACTCATGGAGAAGTTTAACAGTCCCTGACATTATTGCTGAATGTACCATCAATGGGTCCGTATTCTGGAATGGGGCTCTCCACTGGAAAATAAAGAAGAAACCTGGTCGTGAATGTATGCTTTCATTTGATGTGAGCTCTGGGAAGTTTGCAGTGACCCGTTTTCCAGTCAGTGCTGATGTTCCGGATGATTTTGAGATGGTGGAGTTGGATGGCCATTTGAGTTTGGTACAAGTCTATGATACTCAAATGAAAATATGGAGAGTAACAGGAGAGAAGATTGAAGGATTATCTGTCTGTTATGAAGACATGTATTGTATGAACGTGCGGTGGAACAGTTCCTTTAACTGTGAAATAATTCGTGGGTATATTGATGAAGGTTACTTGCTACAGGTGAACACTCACAGAGGCCCTGGTGGAGCTTGGAGGAGATACTTAACGCAGTATTTTCCGAAAATGGAGCAGTTCTTGTCACTGATCATCCCTAGCATTCCCATTTGCTTCAAGACCATTTCTTTCAGGCCCACTCTTATCTCTCCAATGCAGCTTCACTTTGTAAGATCCCATTTATCTTTTCTGTTGCATAATCGTTTTCTCTTCTCTGTTACAAGATCCTTTTCTCCTCTGATGCATGACCCTTTTCTGATAGTAAAACTCGAGTTTCTGAAACCTTGA 1659 41.05 MILVIWSIYRNPELWTLQVRNVRRFKEETESAGKDLLENVFPSAGFRNELKYIEVKRDPKIIVDDMNENGNNAILPEHCTGFLFCRRVPFAKVLLGVIEGGTLNPPFQMLRPKRHRTTKTDGHARSSKKGSQVRSSKKDGRASTTKKDGPVNDLLPELISEILSRLPIELILRCRSVCKTWNSVIQSPLFINLQARKSHNQPSRVILKPIFGGVTATTMHSLFLLDTEERKSRRIHDKSWRFSGLQIMSSCNGLLCITSDSELGPVYISNPITREFVILPSPETGFSLLRHQVGLGFDSSNGKYIVVRAYTDKSKSQVNKFEAIMLGENSWRSLTVPDIIAECTINGSVFWNGALHWKIKKKPGRECMLSFDVSSGKFAVTRFPVSADVPDDFEMVELDGHLSLVQVYDTQMKIWRVTGEKIEGLSVCYEDMYCMNVRWNSSFNCEIIRGYIDEGYLLQVNTHRGPGGAWRRYLTQYFPKMEQFLSLIIPSIPICFKTISFRPTLISPMQLHFVRSHLSFLLHNRFLFSVTRSFSPLMHDPFLIVKLEFLKP* 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5482656 5494676 - Vvi17g439 Vvi17g439 779136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g439 552 SUPERFAMILY F-box domain 149 210 IPR036047 GO:0005515
Vvi17g439 552 SMART fbox_2 155 193 IPR001810 GO:0005515
Vvi17g439 552 TIGRFAM F_box_assoc_1: F-box protein interaction domain 248 420 IPR017451 -
Vvi17g439 552 Pfam F-box domain 156 188 IPR001810 GO:0005515
Vvi17g439 552 Pfam F-box associated 348 446 IPR006527 -
Vvi17g439 552 MobiDBLite consensus disorder prediction 106 150 - -
Vvi17g439 552 MobiDBLite consensus disorder prediction 123 146 - -
Vvi17g439 552 Gene3D - 149 205 - -
Vvi17g439 552 PANTHER BNAA05G37150D PROTEIN-RELATED 157 418 - -
Vvi17g439 552 PANTHER BNAA05G37150D PROTEIN 157 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g439 - - - vvi:104882323 919.842
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .