Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g445 ATGACTATAAACCAAATGAGCGTGACAGATATATCTATTATAAATCATAGGAACATTCACATAATGGAATTCAATAGAGTTGCATACTCAATTGTCTCAGCTGTCTTCTTTAGTATGGTCTTATCTCCTGCAGTGGCATATGATCCGCTGGATCCAAATGGGAACATAACGATCAAATGGGATGTTATGTCTTGGACCTCAGATGGTTATGTGGCAGTGGTGACAATGAGCAACTTCCAAATGTATCGGCACATCATGAGCCCTGGTTGGACCTTAGGATGGATATGGGCTAAGAAAGAAGTAATCTGGTCTATGGTGGGAGCGCAAGCTACTGAACAAGGAGACTGTTCAAAGTTCAAAGGGAACATCCCACACTGTTGTAAGAGGAATCCCACAGTGATCGACTTGCTGCCTGGAGTCCCTTACAACCAACAAATTGCCAATTGTTGCAAGGGAGGCGTTGTAGCATCATGGGGCCAGGACTCGTCTGCTGCAGTCTCATCCTTTCAACTGAGTGTCGGGCTTTCTGGCACGTCAAATAAAACAGTAAGACTGCCCAAGAATTTTACTTTGCTTGGTCCAGGACCTGGCTACACTTGTGGCCAAGCAAAAACTGTGCCATCCTCCATCTTCCTCTCTTCAGATGGCCGGAGAAAAACTCAGGCATTGATGACATGGAATGTTACATGTACTTACTCACAGATGGTGGTCTCCAAGTATCCAAGCTGCTGTGTCTCCTTCTCATCTTTTTACAACTCAACAATCACCCCTTGTACATCCTGTGCCTGTGGTTGCCAGAACAAAAACAACTGCATCATGAGTGATACAAAAATTGAGAGCGTGGTGGGACTACACACTCCAACAAAGGATAATATGCCGCTGCTGCAGTGTACTCAACACAATTGCCCAGTCCGGGTGCACTGGCATGTGAAGGTCAATTACAAGGAGTATTGGCGTGTGAAGATTACCATCACTAATTTTAACTACAGAATGAACTACACGCAGTGGACGCTGGTTGCTCAGCATCCCAATCTGAATAATATCACACAAGTTTTCAGCTTTGCTTACAAGCCACTCATTCCATACACGTCCATAAATGACTCAGGTATGTTTTACGGCATAAAGTTCTATAATGATGTGCTAATGGAAGATGGGCCAGATGGAAACGTCCAGTCTGAAATGATTCTTCAGAAGGACAAGAACACATTCACATTGAAGGAGGGTTGGGCTTTCCCTCAGAGAATTTACTTCAATGGTGATGAATGCATGATGCCCCTTCCTGACTCGTACCCTTTGTTGGCGGGCTCTGCCCCTGCAAATCAAATTGCATTATCAACACTGGCTTCCCTAGTACTTTTGATATTGCTAGCATTTCAATCTTTATCAGATGGGGAGAGACTACTTGTCCCGGAAAAACTAGACCCAAGCTGCCAACCCACAAGTCTAGCTTTTGATCTCGGTGAACTTATTTTTGTCATGGAATTCAACAATTCTGCAAACCCAGTTCACCATACTCCCTTCGAAGCTAAAGATCGTTGCCAATGGCAGGACTGTTACTCATTCAGGGAGTTGAAGCACATTTTCTCAGTTGTCATATTTTTCATGATGGTTTCTCATGCAATTGCCTATGATCCACTGGATCCAACCGGAAACATAACAATAAAATGGGATGTTGTGTCTTGGACCCCAGATGGTTACGTGGCTCTGGTGACTATGAACAACTTCCAAATGTACCGGCACATCATGACCCCTGGCTGGACCCTATCATGGTCATGGGCTAAGAAAGAAGTGATCTGGTCAATGGTGGGAGCCCAAACAACAGAGCAAGGAGACTGTTCCAAGTTCAAAGCGAACATACCACACTGCTGTGAGAAAACCCCAACAGTTGTTGACTTGCTTCCTGGAGTTCCTTACAACCAACAAATTGCCAATTGTTGCAAGGCTGGTGTGGTGGCCGCCTGGGGGCAGGATCCTGCAGGATCAGTCTCCTCCTTTCAGGTGAGCGTTGGGCAAGCTGGGACTTCAAACAAAACAGTGAAACTTCCCAAGAATTTCACTTTGCTTGGTCCAGGACCAGGATACACTTGTGGCCCTGCCAAAATTGTCCCCTCCACCATCTACTTGACTCCTGATCATAGACGAAAAACTCAAGCAATGATGACTTGGAATGTTACCTGCACCTATTCTCAGTTTCTGGCGTCCAAAAACCCCACCTGTTGTGTTTCCTTCTCAAGTTTTTACAATGATACCATGACCCCATGCCCATCCTGCGCGTGTGGTTGCCGCAACAAGAACATGTGTATCTCAAGTGACTCAAAGAAACTGAAGGCGTTACACAATCCAAAGAGGAGCAATACACCATTGCTACAATGCACACATCATATGTGTCCCATACGGGTGCACTGGCATGTCAAGCTCAACTACAAGGATTATTGGCGAGTGAAGATCGCCATTACTAATTTTAACTATCGGATGAATTATACACAGTGGACACTTGTTGCACAGCATCCCAATCTCAACAATGTCACACAAGTATTTAGCTTTGATTACAAGCCTCTTGTCCCCTATGAATCCATAAATGACACTGGTATGTTCTATGGCATGAAATTCTACAATGACCTACTAGTGGAAGCCGGACAGCATGGAAATGTCCAGTCTGAGGTGCTTCTTCAGAAGAACAAGGATACATTTACTTTCAAGCAGGGATGGGCATTCCCTCGAAAAGTTTATTTTAATGGTGATGAGTGCAAGCTGCCCCCGCCTGATACATATCCATTTTTACCAAACTCTGCCCATGCAAATCCATTTGCCTTTTGGACAATGGCAGCTCCTCTGCTTTTGATGATACTGTACACCATTTGGTGA 2865 44.75 MTINQMSVTDISIINHRNIHIMEFNRVAYSIVSAVFFSMVLSPAVAYDPLDPNGNITIKWDVMSWTSDGYVAVVTMSNFQMYRHIMSPGWTLGWIWAKKEVIWSMVGAQATEQGDCSKFKGNIPHCCKRNPTVIDLLPGVPYNQQIANCCKGGVVASWGQDSSAAVSSFQLSVGLSGTSNKTVRLPKNFTLLGPGPGYTCGQAKTVPSSIFLSSDGRRKTQALMTWNVTCTYSQMVVSKYPSCCVSFSSFYNSTITPCTSCACGCQNKNNCIMSDTKIESVVGLHTPTKDNMPLLQCTQHNCPVRVHWHVKVNYKEYWRVKITITNFNYRMNYTQWTLVAQHPNLNNITQVFSFAYKPLIPYTSINDSGMFYGIKFYNDVLMEDGPDGNVQSEMILQKDKNTFTLKEGWAFPQRIYFNGDECMMPLPDSYPLLAGSAPANQIALSTLASLVLLILLAFQSLSDGERLLVPEKLDPSCQPTSLAFDLGELIFVMEFNNSANPVHHTPFEAKDRCQWQDCYSFRELKHIFSVVIFFMMVSHAIAYDPLDPTGNITIKWDVVSWTPDGYVALVTMNNFQMYRHIMTPGWTLSWSWAKKEVIWSMVGAQTTEQGDCSKFKANIPHCCEKTPTVVDLLPGVPYNQQIANCCKAGVVAAWGQDPAGSVSSFQVSVGQAGTSNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTIYLTPDHRRKTQAMMTWNVTCTYSQFLASKNPTCCVSFSSFYNDTMTPCPSCACGCRNKNMCISSDSKKLKALHNPKRSNTPLLQCTHHMCPIRVHWHVKLNYKDYWRVKIAITNFNYRMNYTQWTLVAQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLVEAGQHGNVQSEVLLQKNKDTFTFKQGWAFPRKVYFNGDECKLPPPDTYPFLPNSAHANPFAFWTMAAPLLLMILYTIW* 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5529704 5544382 + Vvi17g445 Vvi17g445 779142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g445 954 PANTHER PROTEIN COBRA 31 455 IPR006918 GO:0010215|GO:0031225
Vvi17g445 954 PANTHER PROTEIN COBRA 527 950 IPR006918 GO:0010215|GO:0031225
Vvi17g445 954 PANTHER COBRA-LIKE PROTEIN 4 31 455 - -
Vvi17g445 954 PANTHER COBRA-LIKE PROTEIN 4 527 950 - -
Vvi17g445 954 Pfam COBRA-like protein 566 729 IPR006918 GO:0010215|GO:0031225
Vvi17g445 954 Pfam COBRA-like protein 70 233 IPR006918 GO:0010215|GO:0031225
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1005 Vvi17g445 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g445 - - vvi:100258803 994.571